Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06810 1251 / 0 IBR3 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) AT3G45300 94 / 3e-20 IVDH, ATIVD, IVD isovaleryl-CoA-dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033467 [exp] 1664 / 0 AT3G06810 1258 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Lus10036122 [exp] 99 / 1e-21 AT3G45300 686 / 0.0 isovaleryl-CoA-dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010448 [exp] 1337 / 0 AT3G06810 1251 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Potri.008G219000 [exp] 1323 / 0 AT3G06810 1236 / 0.0 IBA-RESPONSE 3, acyl-CoA dehydrogenase-related (.1) Potri.009G011700 [exp] 101 / 1e-22 AT3G45300 694 / 0.0 isovaleryl-CoA-dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01636 [flax] [poplar] APH Phosphotransferase enzyme family CL0544 [flax] [poplar] AcylCoA_ox_dh_N PF02771 [flax] [poplar] Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal domain CL0544 [flax] [poplar] PF02770 [flax] [poplar] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0087 [flax] [poplar] Acyl-CoA_dh PF00441 [flax] [poplar] Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020908 pacid=23177887 polypeptide=Lus10020908 locus=Lus10020908.g ID=Lus10020908.BGIv1.0 annot-version=v1.0 ATGTCTAGCCGGACATCTGATCTCGTCGGTGAAGTCCAGGCGGCTCAACAGTTCGATCGGAACGCCTTGTTCCGTTACGTCTCTGCTAACGTCGCCGGTT TCCCTGACTCTCCGCCTTCCGCCTTCTCCGTTAAGCAGTTTGGACATGGCCAATCGAATCCCACGTTTCTGTTGGAAGCTGGAGCCGGAGCCTCCTTGAA ACGCTACGTTCTCAGGAAAAAGCCTTCTGGACAGTTGCTGCCGTCTGCTCATGCCGTCGATAGAGAGTACCAAGTTCTTCGAGCTCTGGGAGAGCATACT CAAGTTCCTGTTCCCAAGGTGTTCTGTTTGTGTATGGACTCGAGTGTGATTGGAACTGCATTCTATATAATGGAGTATTTGGAAGGCCGCATTTTCATTG ACCCCAGGATCCCGGGGGTTGCACCTGAGAGTAGGAGGGCAATCTACCGAGAAACTGCAAGGACATTGGCTGCTCTGCATTCTGTAGATGTGGATGCTAT CGGTCTGAAAAAGTATGGGCGTCTGGATAACTACTGTAAAAGACAGGTGGAAAGATGGGCTAAACAATACATTGCGTCAACTGCTGAGGGGAAGTCTCCG AGATATGACAGGATGTTAGAGCTGTCTGATTGGTTGCGTCAACACATTCCTACTGAGGACGCTTTAGGGACGGCAGGAGGCCTGGTTCATGGGGACTTCC GCATTGACAACCTTGTATTTCATCCCTTTGAGGATCGAGTGATTGGTATTCTGGACTGGGAATTGTCTACAATTGGGAACCAGATGAGTGATGTTGCTTA CTCTTGTTTGGCTCATCATGTAGACATTGACCTTTCCAACCAACAACTTGGTGAAGGAATGCAATCCGCCCTTCCTGAAGGGATTCCTTCACAAACAGAA TATATTGCCGAGTATTTTTCTGCATCTGGAAAACCATGGCCTGCCAACACATGGAAGTTTTATGTTTCCTTTGCTATGTTCCGTGGAGCTTCTATCTATG CTGGCGTGCATAGTCGATGGATAATGGGTAATGCTTCCGGGGGCGAGCGTGCTCGTCATGCTGGAAGACTGGCCAATGGTCTTATAGATTATGCTTTGGA ATTTATATCAAAGCCAACAGTACTCCCTGATCGCTCTCCATATGATGAAGCTGCTCAGGAAATGAATACTCAAGCACTTATGACGGAAAGTGGGATGTTA GTTCCTTCGAGAAAAGTGCTGGAACTGAGGATGAAACTAATGAAGTTTATGGAAGATCACATTTACCCCATGGAAACTGAATTTGCTAAACTTGCTCGGT CTTCCTCACGCTGGACAATCCACCCGGAAGAGGAGAGGTTAAAGGATCTGGCAAAGAAACAAGGATTATGGAACTTATTTATTCCGTTTGACAGTGCTGA AAGAGCCAGGAAGCTATTATTTGACGGGAGCAACGATGTCCCTTCAAGTGGTGCGCATGATCAATTACTTGGTGCTGGCCTCTCAAATCATGAATATGGC CACCTTTGTGAGATTATGGGTCGTTCTGTATGGGCGCCGCAGGTTTTCAATTGTGGTGCCCCTGACACCGGAAATATGGAGGTATTATTGCGCTATGGAA ATAAGGACCAGCTCCTTAAATGGCTTATCCCGTTGCTTCAAGGAAAGATTCGTTCAGGATTTGCAATGACTGAGCCACGAGTTGCATCTTCTGATGCAAC CAATATCGAGTGCTCCATTAGAAGAGAAGGTGACTCGTACATTATCAACGGGACGAAATGGTGGACAAGCGGAGCCATGGATCCAAGGTGTAAAGTTCTC ATCGTCATGGGAAAAACAGACTTCGGAGCTGCTATTCATAAACAGCAGTCCATGATATTAGTAGACATGCATGCTCCAGGCGTAAAAGTAAAGAGACCAC TTGATGTCTTTGGCTTTGATGATGCACCTCATGGGCACGCCGAAATCACATTCGAAAATGTACTAGTGCCCGCAGCGAATATTCTTCTGGGAGAAGGCCG TGGGTTTGAGATTGCACAGGGGAGACTAGGTCCAGGAAGGCTGCATCACTGCATGAGATTGATAGGTGCTGCGGAGCGTGGAATGCAGTTGATGGTTGAA AGAGCTCTCAGTAGAAAAACTTTTGGGAAGTTCATTGCTCAGCATGGTTCATTCCAAACAGATCTTGCCCACTGTCGGATAGAGCTGGACAAGACAAGGT TGTTGGTTTTGGAGGCAGCGGAGCAGCTTGATCGGCTAGGGAACAAGAAGGCCCGAGGGACAATCGCAATGGCCAAGGTAGCAGCACCAAGTATGGCTCT GATGGTGTTGGACAGAGCAATGCAAGTGCACGGTGGGATGGGGTTATCGTCGGACACGGTTCTGTCGCATCTTTGGGCCACCGCTCGGACATTGAGGATA GCCGATGGTCCGGATGAAGTCCACTTGGGTACCATTGCCAAGTTAGAACTACGGAGAGCTAAGCTTTGA
AA sequence Show only first row Show all	>Lus10020908 pacid=23177887 polypeptide=Lus10020908 locus=Lus10020908.g ID=Lus10020908.BGIv1.0 annot-version=v1.0 MSSRTSDLVGEVQAAQQFDRNALFRYVSANVAGFPDSPPSAFSVKQFGHGQSNPTFLLEAGAGASLKRYVLRKKPSGQLLPSAHAVDREYQVLRALGEHT QVPVPKVFCLCMDSSVIGTAFYIMEYLEGRIFIDPRIPGVAPESRRAIYRETARTLAALHSVDVDAIGLKKYGRLDNYCKRQVERWAKQYIASTAEGKSP RYDRMLELSDWLRQHIPTEDALGTAGGLVHGDFRIDNLVFHPFEDRVIGILDWELSTIGNQMSDVAYSCLAHHVDIDLSNQQLGEGMQSALPEGIPSQTE YIAEYFSASGKPWPANTWKFYVSFAMFRGASIYAGVHSRWIMGNASGGERARHAGRLANGLIDYALEFISKPTVLPDRSPYDEAAQEMNTQALMTESGML VPSRKVLELRMKLMKFMEDHIYPMETEFAKLARSSSRWTIHPEEERLKDLAKKQGLWNLFIPFDSAERARKLLFDGSNDVPSSGAHDQLLGAGLSNHEYG HLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKDQLLKWLIPLLQGKIRSGFAMTEPRVASSDATNIECSIRREGDSYIINGTKWWTSGAMDPRCKVL IVMGKTDFGAAIHKQQSMILVDMHAPGVKVKRPLDVFGFDDAPHGHAEITFENVLVPAANILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVE RALSRKTFGKFIAQHGSFQTDLAHCRIELDKTRLLVLEAAEQLDRLGNKKARGTIAMAKVAAPSMALMVLDRAMQVHGGMGLSSDTVLSHLWATARTLRI ADGPDEVHLGTIAKLELRRAKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10020908 [exp]	0	1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	1.7	0.9665
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	2.0	0.9648
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10021321 [exp]	2.2	0.9562
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10013218 [exp]	2.6	0.9545
AT5G41810			unknown protein		Lus10001907 [exp]	3.0	0.9584
AT2G30140			UDP-Glycosyltransferase superf...		Lus10026394 [exp]	4.0	0.9540
AT2G14440			Leucine-rich repeat protein ki...		Lus10041860 [exp]	4.0	0.9569
AT2G47130		AtSDR3	short-chain dehydrogenase/redu...		Lus10042181 [exp]	4.9	0.9559
AT3G15760			unknown protein		Lus10030098 [exp]	5.5	0.9506
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Lus10002214 [exp]	6.0	0.9478

Compare expression of checked genes

Lus10020908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.