Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05610 529 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 525 / 4e-180 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 518 / 2e-179 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 463 / 4e-158 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53840 377 / 3e-124 ATPME1 pectin methylesterase 1 (.1) AT2G26450 375 / 5e-123 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33230 367 / 6e-120 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G04960 358 / 3e-117 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 348 / 7e-113 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 347 / 1e-112 ATPME2 pectin methylesterase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033466 [exp] 1067 / 0 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 729 / 0 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10037489 [exp] 677 / 0 AT5G27870 480 / 3e-164 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039927 [exp] 407 / 3e-135 AT2G26450 598 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003968 [exp] 404 / 1e-134 AT5G49180 456 / 3e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10023775 [exp] 403 / 2e-134 AT5G49180 454 / 3e-154 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018335 [exp] 387 / 1e-127 AT3G05610 446 / 3e-149 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027656 [exp] 365 / 5e-122 AT4G33230 499 / 6e-174 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 358 / 3e-117 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010464 [exp] 572 / 0 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022900 [exp] 516 / 2e-178 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 508 / 2e-175 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051200 [exp] 448 / 1e-151 AT2G26450 634 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.006G134700 [exp] 431 / 3e-145 AT4G33230 608 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209200 [exp] 407 / 3e-136 AT5G49180 459 / 2e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021300 [exp] 404 / 6e-135 AT4G33230 459 / 5e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G021600 [exp] 403 / 1e-134 AT4G33230 484 / 1e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209000 [exp] 394 / 3e-131 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247600 [exp] 375 / 7e-124 AT3G10710 609 / 0.0 root hair specific 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10020909 pacid=23178019 polypeptide=Lus10020909 locus=Lus10020909.g ID=Lus10020909.BGIv1.0 annot-version=v1.0 ATGGTGGTCGCGGTCGCCGTCGGTGTAAACAACGGCCCCGACAAAAGCGAAGGAGGCGGGGACGGGCACGGAGGCATATCCACAACGTCCAAATCCGTGA AGGTGCTTTGTGCACCATCCCTATACAAAGAAACCTGCGAGAGCAGTCTCGCCAAGTCGGGCAATAACGTGACCGACCCGAAAAAGATGGTCCAGGTTGG GTTCGAGCTCGCGGTCGAGTCCTTGAATGACGCGATGAAGAACTCGACCACCATCAAGGAGGTGGCCGAGGACCCCAGGGCGAAACGCGCGGTGGAGATC TGCGAAGATCTTATCGAGACCTCCATTGATGATATGAGGCGGTCTCTAGATGAGCTCGACAATTTCGACATGTCGAAGGCGTACATTCACATCGATAATT TGAAGACGTGGCTCGAGGCCACCATCACGTATCAGGAAACCTGCCGCGACGAGTTCCAGAACACGACCGGGCCGTCGGGCGACAAGATGAGGGACATTCT GAAACTGTCCGGCGAGCTGACGAGCAACGGTCTAGCCATGGTGAGCGGGCTGTCCCAGATATTGAAGACGTTGCACATACCCGGGGCAGAGTCGAGAGAC GACGACGAAAACTTCGGCGACAGTCACAGGAGGTTGTTGGGAGCTACGGCGGAAGAAGACGACGCTGGGGCTGGGGGGTTCCCGAGGTGGGTGACGCCGA TGCAGAGGAGGTTGTTGGCAGCGACGCCGGAGAATGTGAAGCCGGACATTGTGGTGGCTAAGGACGGGAGCGGGCAGTTTAAGAGTATTATGGAGGCTAT TAAGACTATTCAGAAGAAGCATAAGGTTCCGATTGTCATGCATGTTAAGGCCGGAGTTTATAATGAACAAGTGCTCATTCCTAAGTATGTTACCGGACTT ATGATGATCGGCGATGGGCCGACTAAGACTAAGGTCACTGGGAGGAAGAACTTCCATGAGGGTACCCGTACTTCCGATACTGCCACTTTTGCAATACTAG CACCAGGGTTCATAGCAAAGGACATGGGGTTCGAGAACACAGCAGGAGCAGAAGGCCACCAAGCCGTAGCATACAGGTCCCAATCCGACAACTCAGTAAT TTATAACTGCCAATTCGACGGCTACCAAGACACTCTGTATCCGCAATCCAACCGTCAATTCTACCGCGACTGCGTCATCTCGGGAACCATCGACTTCATC TTCGGCGTGGCTCGAGCCGTCCTCCAGAACTGCACAATGATCATCCGCAAACCGATGGCCAACCAAGCTTGCATCGTGACGGCAGAGGGCCGCAAGGATC CTAACGGATTGTCGGCCATCGTCATCCAGAACAGTCGCATCAAGGGTGACCCGGCTTACGTTCCGGTCAAGGACCAGAACAAAGGCTACCTGGCACGGCC CTGGAAGATATATTCCAGGACCGTGATCATGCACTCTGTCATTGACGGAGTTATCCAGCCGGAAGGCTTTTTGCCTTGGGATAAAGATTTGGGGCTCAAA ACGCTTTACTATGCAGAGTTTGAGAACACGGGTCCAGGTTCGGATACGTCTGGGCGGGTCAAGTGGCCCGGGATAAAGCATATCGGAGCTGCCGAGGCGG AGAAGTTCACGCCGTCGAAGTTGTTTGTGGAAGGAGATGCTTGGATTACGGACAGTGGTGTTCCTTATATTCGTGGTATGAAGTAA
AA sequence Show only first row Show all	>Lus10020909 pacid=23178019 polypeptide=Lus10020909 locus=Lus10020909.g ID=Lus10020909.BGIv1.0 annot-version=v1.0 MVVAVAVGVNNGPDKSEGGGDGHGGISTTSKSVKVLCAPSLYKETCESSLAKSGNNVTDPKKMVQVGFELAVESLNDAMKNSTTIKEVAEDPRAKRAVEI CEDLIETSIDDMRRSLDELDNFDMSKAYIHIDNLKTWLEATITYQETCRDEFQNTTGPSGDKMRDILKLSGELTSNGLAMVSGLSQILKTLHIPGAESRD DDENFGDSHRRLLGATAEEDDAGAGGFPRWVTPMQRRLLAATPENVKPDIVVAKDGSGQFKSIMEAIKTIQKKHKVPIVMHVKAGVYNEQVLIPKYVTGL MMIGDGPTKTKVTGRKNFHEGTRTSDTATFAILAPGFIAKDMGFENTAGAEGHQAVAYRSQSDNSVIYNCQFDGYQDTLYPQSNRQFYRDCVISGTIDFI FGVARAVLQNCTMIIRKPMANQACIVTAEGRKDPNGLSAIVIQNSRIKGDPAYVPVKDQNKGYLARPWKIYSRTVIMHSVIDGVIQPEGFLPWDKDLGLK TLYYAEFENTGPGSDTSGRVKWPGIKHIGAAEAEKFTPSKLFVEGDAWITDSGVPYIRGMK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05610			Plant invertase/pectin methyle...		Lus10020909 [exp]	0	1
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10024425 [exp]	3.3	0.8914
AT3G19550			unknown protein		Lus10013900 [exp]	4.2	0.9155
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10041341 [exp]	6.0	0.9070
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	6.3	0.9150
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Lus10015017 [exp]	7.3	0.9094
					Lus10038154 [exp]	8.7	0.9054
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10009917 [exp]	11.2	0.8770
					Lus10033284 [exp]	12.0	0.9028
AT5G10520		RBK1	ROP binding protein kinases 1 ...		Lus10002659 [exp]	12.4	0.9007
AT5G41020	MYB		myb family transcription facto...		Lus10022932 [exp]	13.9	0.8978

Compare expression of checked genes

Lus10020909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.