Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22170 477 / 3e-170 Phosphoglycerate mutase family protein (.1) AT1G78050 462 / 9e-165 PGM phosphoglycerate/bisphosphoglycerate mutase (.1) AT3G50520 57 / 2e-09 Phosphoglycerate mutase family protein (.1) AT5G04120 57 / 3e-09 Phosphoglycerate mutase family protein (.1) AT5G22620 43 / 0.0002 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033465 [exp] 712 / 0 AT1G22170 478 / 8e-171 Phosphoglycerate mutase family protein (.1) Lus10014360 [exp] 55 / 3e-08 AT3G50520 313 / 5e-108 Phosphoglycerate mutase family protein (.1) Lus10026068 [exp] 55 / 4e-08 AT3G50520 312 / 1e-107 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G093300 [exp] 544 / 0 AT1G22170 495 / 2e-177 Phosphoglycerate mutase family protein (.1) Potri.005G168000 [exp] 529 / 0 AT1G22170 489 / 3e-175 Phosphoglycerate mutase family protein (.1) Potri.005G078100 [exp] 464 / 4e-165 AT1G22170 451 / 7e-160 Phosphoglycerate mutase family protein (.1) Potri.007G040700 [exp] 61 / 3e-10 AT3G50520 327 / 2e-113 Phosphoglycerate mutase family protein (.1) Potri.011G052200 [exp] 47 / 8e-06 AT5G22620 184 / 4e-55 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3) Potri.004G187700 [exp] 46 / 3e-05 AT5G22620 634 / 0.0 phosphoglycerate/bisphosphoglycerate mutase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10020910 pacid=23177933 polypeptide=Lus10020910 locus=Lus10020910.g ID=Lus10020910.BGIv1.0 annot-version=v1.0 ATGACGTCCTCTGCTTTTCACCAACCCACTGGGAGACTCCATTGCCCTAACCAGCGACAAGTCTGCAGCTCCAGGCTCTACCATGGATGTGGAAATGCGT CGATGAAAGTTCCTTTCAAGGTTTCTAAACTTCAAATTGGTTGGTCAACTGCTGGTGGTGATGGGAACTCGAGATTTGTTACAACTTCAGCTTCCAACAG ATCGGTGGTTGATCCTGTTTCTTCCCACTCTTCTAATGGCACCAATGGTCAGCGCAAGAAATCAAGTGAAGCAGCTTTGATACTGATCAGGCATGGTGAG TCATTATGGAATGAAAAGAACTTGTTCACCGGGTGTGTCGATGTACCCTTGACGAAAAAGGGTGTCGAAGAGGCAATTGAAGCCGGGAAACGAATCAGCA ATATACCTGTCGACATGATCTATACATCTGCATTGATTCGTGCCCAGATGACTGCCATGCTTGCAATGACCCAGCATCGTAGGAAGAAGGTTCCAATAAT CATGCACAATGAGAATGAACAAGCCAGATCATGGAGTCAGGTTTTCAGTGAAGAAACAATGAAGCAATCCATCCCAGTTGTAACAGCTTGGCAACTTAAT GAAAGAATGTATGGCGAATTACAGGGTCTCAACAAGCAGGAAACAGCTGACAGGTACGGGAATGAAAAGGTTCACGAGTGGAGACGAAGCTATGACATTC CCCCACCTAATGGTGAAAGTTTGGAAATGTGTGCTGAAAGAGCTGTTGCTTACTTCAGAGATTATATCGAACCCCAACTTCAATCTGGGAAGAACGTGAT GATTGCTGCCCATGGAAATTCATTGAGATCTATTATCATGTATCTTGACAAATTAACATCTCAGGAGGTTGTTAGTCTGGAGCTATCAACAGGAATACCA ATGCTGTACTTATTCAAAGAAGGAAGGTTCGTTAGGAGGGGAAGCCCTGTGGCACCATCAGAAGCTGGGGTATATGCCTATACTAGGACTTTAGCTCAGT ACAGACAGAAATTAGATGAGATGGTGCACTAA
AA sequence Show only first row Show all	>Lus10020910 pacid=23177933 polypeptide=Lus10020910 locus=Lus10020910.g ID=Lus10020910.BGIv1.0 annot-version=v1.0 MTSSAFHQPTGRLHCPNQRQVCSSRLYHGCGNASMKVPFKVSKLQIGWSTAGGDGNSRFVTTSASNRSVVDPVSSHSSNGTNGQRKKSSEAALILIRHGE SLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISNIPVDMIYTSALIRAQMTAMLAMTQHRRKKVPIIMHNENEQARSWSQVFSEETMKQSIPVVTAWQLN ERMYGELQGLNKQETADRYGNEKVHEWRRSYDIPPPNGESLEMCAERAVAYFRDYIEPQLQSGKNVMIAAHGNSLRSIIMYLDKLTSQEVVSLELSTGIP MLYLFKEGRFVRRGSPVAPSEAGVYAYTRTLAQYRQKLDEMVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22170			Phosphoglycerate mutase family...		Lus10020910 [exp]	0	1
AT1G20550			O-fucosyltransferase family pr...		Lus10014444 [exp]	13.5	0.7525
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10011326 [exp]	15.5	0.6948
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10001195 [exp]	24.3	0.7373
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10024485 [exp]	29.4	0.7275
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10038287 [exp]	33.2	0.7093
AT3G28150		AXY4L, TBL22	ALTERED XYLOGLUCAN 4-LIKE, TRI...		Lus10039438 [exp]	36.0	0.7128
AT5G05820			Nucleotide-sugar transporter f...		Lus10016446 [exp]	42.1	0.6399
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10040423 [exp]	46.2	0.6766
AT3G11690			unknown protein		Lus10029349 [exp]	60.7	0.6359
AT1G49740			PLC-like phosphodiesterases su...		Lus10012665 [exp]	82.7	0.6651

Compare expression of checked genes

Lus10020910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.