Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08690 374 / 1e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 359 / 1e-123 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G75170 277 / 1e-91 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 260 / 4e-85 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT5G63060 86 / 5e-19 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G05370 86 / 2e-18 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G01630 82 / 8e-18 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G22410 83 / 3e-17 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G14820 71 / 1e-13 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G19650 62 / 2e-10 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033464 [exp] 622 / 0 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10010804 [exp] 274 / 9e-91 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10025128 [exp] 270 / 3e-89 AT1G75170 380 / 3e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10016312 [exp] 270 / 6e-89 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10014312 [exp] 268 / 4e-88 AT1G75170 397 / 4e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10026020 [exp] 268 / 4e-87 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10023956 [exp] 120 / 3e-32 AT4G36640 166 / 1e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016733 [exp] 95 / 4e-22 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10004684 [exp] 94 / 8e-22 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G093400 [exp] 426 / 7e-149 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G068700 [exp] 337 / 2e-114 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G261000 [exp] 278 / 5e-92 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 264 / 2e-86 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 263 / 4e-86 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025800 [exp] 262 / 6e-86 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G168100 [exp] 142 / 4e-40 AT4G08690 134 / 4e-38 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.017G063966 [exp] 99 / 1e-23 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.003G162100 [exp] 91 / 7e-21 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.010G088300 [exp] 91 / 5e-20 AT1G05370 520 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10020911 pacid=23178014 polypeptide=Lus10020911 locus=Lus10020911.g ID=Lus10020911.BGIv1.0 annot-version=v1.0 ATGGTTGACCTCCTTCTGTATTCCTTTTTGCCTTGTTTCCTTCACTTCACTTCACTTCAGTTTAGCAAGAACAAGAAGGAGCTAAGCATTTGCTTCTCAT ATCTTCAGCTTTCCGAAGCTCTTCTCACTCTCCCTTCACTCGGTCGCAGGGTGAGGTTGGTGATGAGTCTCGCTGCACAACAGTCCTCATCAAATGGCTT CGACAAGCATTTGTCATCTGCAGAGCAACAGGAGAAGATAAATGAGGTTAGGCGGTTGGTGGGGACGTTGCCAGAACCGTTGTCCATTTACTGTTCCAAT GCAACAATCTGTAGATATCTAACGGCTAGAAACTGGAATGTAAAGAAGGCAACTAAAATGCTGAAAGATACTATCAAATGGAGAGCAGATTACAAGCCAG AAAATATTCGTTGGGAAGAGATTGCTCTGGAGGCAGATACGGGGAAAATCTACAGATCAAACTGTATTGATAAGCAAGGAAGACCTGTGTTGGTCATGAG ACCTAGTCGCCAGAACACAAAGTCAATCAAAGGACAAATTAGGTACTTGGTGTATTGCATGGAGAATGCGGTCATGAATTTGCCACCAGAACAGGAGAAG ATGGTTTGGCTCATTGATTTTGACGGATTTAATCTGTCACATATCTCACTCAAGGTCACCAAGGAAACAGCCAACGTTTTACAGAACCATTATCCAGAGC GCTTGGGTCTAGCTATTCTATACAACCCTCCCAAGTTCTTTGAACCTTTCTGGATGGCAGCAAAGGTGTTCCTAGAGCCAAAGACCCATAACAAAGTAAA ATTTGTTTACTCTGACGTACGTGAAACCATGAAGATAATGGAGCAACATTTCGATATGGACCGTCTTGAGTCGGCATTTGGTGGGAAGGATATGGCAGGT TTCGACATCGGCGAATATGCAAAGAGAATGAAGGAAGACGACAAGAAGGTGCCTTCGTTCTGGACCAAGGAGGGTTGTCGTCCTTCATCATCGTCGGCGT CAGAACCGGCCTTGGAATCGGCTGCTTCGGACCATGATAGCACACCTGGTTCGGAGACCATCTCGGTGGATGTCGACCACAACGGTGGAACTGAAAAGAA AGAGTGTGAAGATGTTGACGACAAAGGGAATAACGGCTGA
AA sequence Show only first row Show all	>Lus10020911 pacid=23178014 polypeptide=Lus10020911 locus=Lus10020911.g ID=Lus10020911.BGIv1.0 annot-version=v1.0 MVDLLLYSFLPCFLHFTSLQFSKNKKELSICFSYLQLSEALLTLPSLGRRVRLVMSLAAQQSSSNGFDKHLSSAEQQEKINEVRRLVGTLPEPLSIYCSN ATICRYLTARNWNVKKATKMLKDTIKWRADYKPENIRWEEIALEADTGKIYRSNCIDKQGRPVLVMRPSRQNTKSIKGQIRYLVYCMENAVMNLPPEQEK MVWLIDFDGFNLSHISLKVTKETANVLQNHYPERLGLAILYNPPKFFEPFWMAAKVFLEPKTHNKVKFVYSDVRETMKIMEQHFDMDRLESAFGGKDMAG FDIGEYAKRMKEDDKKVPSFWTKEGCRPSSSSASEPALESAASDHDSTPGSETISVDVDHNGGTEKKECEDVDDKGNNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08690			Sec14p-like phosphatidylinosit...		Lus10020911 [exp]	0	1
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	1.7	0.9347
AT1G50575			Putative lysine decarboxylase ...		Lus10003762 [exp]	4.0	0.9166
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10025604 [exp]	4.1	0.8929
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10037613 [exp]	4.6	0.9171
AT5G05670			signal recognition particle bi...		Lus10013031 [exp]	5.2	0.9010
					Lus10032802 [exp]	5.2	0.8825
AT3G47160			RING/U-box superfamily protein...		Lus10001209 [exp]	5.8	0.9173
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	5.9	0.9113
AT5G65880			unknown protein		Lus10039652 [exp]	6.3	0.8905
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	6.5	0.9101

Compare expression of checked genes

Lus10020911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.