Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00030 275 / 5e-94 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT5G09820 56 / 4e-09 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033514 [exp] 56 / 5e-09 AT5G09820 270 / 3e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10020860 [exp] 55 / 9e-09 AT5G09820 269 / 5e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10010444 [exp] 46 / 1e-05 AT1G51110 490 / 2e-173 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G058400 [exp] 291 / 1e-100 AT4G00030 282 / 2e-97 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.003G020700 [exp] 63 / 2e-11 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G309300 [exp] 56 / 5e-09 AT5G09820 268 / 7e-90 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Potri.001G011700 [exp] 40 / 0.0008 AT1G51110 532 / 0.0 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10020912 pacid=23177927 polypeptide=Lus10020912 locus=Lus10020912.g ID=Lus10020912.BGIv1.0 annot-version=v1.0 ATGATGTATGTGGATGGAGTTTTTGTGAACCAGAAACAAACCGCCATTTTCACCTCAGCTAAGAGATCCAGGATGCAGCTTACCGGAATCGCAGCTTCAC ATGAGCACTGGCTGCACTTCCGAAATCCCTTCAAATCCCCCAAACCCAAACTCCTCAAAAAGGCAGCAGCAGCATCAGTAGTAATCCCTAAAATCGAATG TTCTTCTTCTTCGGCCAAGCAGCGGTTGCTCAGCCTCATCTCCGACCAAGATCGAGGCCTGAGAACCCAGAAAGACCCGCAAAGACTCAACTCAATCGTC TCGGTCATCAACGAATTGGCGGAAGTCGGGAGAGAAACGATCACCACGACGGGGGATTCGCTATCGGCGACGTGGCGGCTGATGTGGACGACGGAGAAAG AGCAGCTGTTCATCATAGACAAGGCAGGGGTGTTTGGGACGAAAGCAGGGGATGTGTTGCAGGTGATTGATGTGGAGAAAGGGAAGTTGAACAATGTGAT TACTTTCCCTCCCGACGGCGTCTTCTTCGTTCGCTCGACCATCCGAATCGCTTCTGCTCAGAGGGTGGATTTCAGATTCACGAGCGCCGTGTTGCGAGGG AGGGATTGGGAGATTCCGCTGCCGCCGTTCGGACAGGGTTGGTTTGAGACTGTGTACTTGGATGAGGAGATTCGGGTCGCCAAGGATATCAGAGGCGACT ACTTGGTTGTTGATCGAGCTCCGTATTCTTGGAAAGAATGA
AA sequence Show only first row Show all	>Lus10020912 pacid=23177927 polypeptide=Lus10020912 locus=Lus10020912.g ID=Lus10020912.BGIv1.0 annot-version=v1.0 MMYVDGVFVNQKQTAIFTSAKRSRMQLTGIAASHEHWLHFRNPFKSPKPKLLKKAAAASVVIPKIECSSSSAKQRLLSLISDQDRGLRTQKDPQRLNSIV SVINELAEVGRETITTTGDSLSATWRLMWTTEKEQLFIIDKAGVFGTKAGDVLQVIDVEKGKLNNVITFPPDGVFFVRSTIRIASAQRVDFRFTSAVLRG RDWEIPLPPFGQGWFETVYLDEEIRVAKDIRGDYLVVDRAPYSWKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00030			Plastid-lipid associated prote...		Lus10020912 [exp]	0	1
AT1G74070			Cyclophilin-like peptidyl-prol...		Lus10008990 [exp]	1.4	0.9464
AT1G51100			unknown protein		Lus10040511 [exp]	4.5	0.9314
AT1G16080			unknown protein		Lus10041625 [exp]	8.1	0.9196
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10028969 [exp]	8.5	0.9221
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10033434 [exp]	9.3	0.9222
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10020508 [exp]	12.0	0.9206
AT4G28660		PSB28	photosystem II reaction center...		Lus10024959 [exp]	13.9	0.8991
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Lus10013078 [exp]	15.4	0.9061
AT3G61870			unknown protein		Lus10010112 [exp]	16.5	0.9150
AT3G26070			Plastid-lipid associated prote...		Lus10020982 [exp]	17.3	0.9015

Compare expression of checked genes

Lus10020912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.