Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30100 885 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 797 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 100 / 4e-21 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15570 61 / 3e-09 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033462 [exp] 1551 / 0 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 114 / 1e-25 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 114 / 2e-25 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003960 [exp] 88 / 2e-17 AT4G15570 938 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 83 / 5e-16 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015030 [exp] 82 / 8e-16 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G168300 [exp] 1044 / 0 AT4G30100 1620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G093500 [exp] 953 / 0 AT4G30100 1637 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G253700 [exp] 96 / 8e-20 AT1G16800 1405 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G056700 [exp] 52 / 2e-06 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020914 pacid=23177952 polypeptide=Lus10020914 locus=Lus10020914.g ID=Lus10020914.BGIv1.0 annot-version=v1.0 ATGGGTTCTCGAGGGATAATATTTGATCTTAATGAACCTGCCGCCGAGGATGATGAGACAGGTAATGTCTCTTCTCAACCACAGATATCACCGCTCCCTT CAACTTCACAGACTTCTGCATCGGTAAATTCATCAATAGCTGCACAAGCAACAAAGGATAACCTTGCTTTCTCACATCAATCATCGATGTCAGGTTTTCA GCCATTTGTTCGACCGAAGGTTACCAATGATGAAGTGGTTCTTGAACAGAACACAGCACTTGATCGGATATCTAAGTTTGAGCCTCCATTGAATTTAAAT AATGGTTATGGAAGGAAAACACAACCCCAGTTAGCTTCTGGTTCTACAACATTTCAACCTACTGAACGAGAAGAAGGCGAGTGGGTGGATACTGATGGTT CTGCTGGAAGTAGTCAACATTTAGACGGCAATGGTAATCTTGATGCATCAAGTTGTCCTGAAGCAAAAGTAGTTGCCTCGAGACAAAGAGAAGTGAAAGG CTCTGAAGCTAGTCATGCACTTAGGCTTGCAAATCTTCCAGCAAAGAGGAAAATAGATCACCAAAAAGAAGCAATGCTAGGAAAGATGCGCAATAGACAA ACTATGTTAATTAATATTGATGAGGTTAAGCAAGCTGAAACCGTGAAATCCCTGACCCCAAAGAGACAGCTGACTTCAGCCCGAACAAAAGAATCTAAGA CACTTCCTTTGGCTGCTGGAGAGAAGTACAATCATTCAATATTGAAGGATCAGAAACAGGTTGAGTTACCATCCAGTGAGGCTGGTACCAGTCTGGAGTT TTCTCAAGCCAAATCTGAAAGCAATGGTGAGATAAATTCATCTCAGGTAGATAAGTTCAGGAGGCTTAATGGCGATGCCGACTCATTAGATACACAACTT CCTCCTGTTACAAGACAGAGTTCATGGAAGCAACCAATTGATATGAGACATCAGAAGAATTTCCAAATGTCCAATAGGAGGCCACCTTCAAACAACCAGA ACCCTTTGGATCAAAAACCGGGGGGCAAAAAGAGTGTTCATCTGAAGAAGACTGTTCTAACAGGTTCTTCTTATCATGATACCTCAGTTGAACGTCTTAT CCGAGAGGTGACAAATGAAAAGTTTTGGCACCATCCAGAGGATTCTGAGCTTCAGTGTGTTCCGGGCCAGTTTGAATCAAGCGGCGATTATGTCAGTGTG TTTGAACCTTTGCTTTTTGAGGAATGTCGAGCACAACTTTATAGCACATGGGAGGAGTTATCGGAAACGAACTCGCACATCATGGTGCGGGTAAAAAATG TTGAAAGGCGAGAGAGAGGATGGTACGATGTGATTGTCCTCTCGGTGAATGATTGCAAGTGGAATTTCAAGGAGGGTGATGTTGCCGTTCTCTCAAATCC AAAGCCTGGTACTGTTAGATCAAAGAGGAACTTGGGCTCAACTAGTGAAGATGGTGATGAGCCTGATAAGCTTGATCGCGTGGCTGGCACTGTTAGAAGG CATATTCCTCTCGACAATCGTGATCCTCCTGGTGCAATCCTCCATTTTTATGTTGGAGACTCGTATGATCCATATGGCAAGGTTGATGATGATCATATCC TCAGGAAACTTCAACATCGGAGCACTTGGTACCTGACTGTACTTGGTTCTCTCGCAACCACCCAGCGAGAGTATGTTGCCTTGCATGCATTTTGCCGACT CAACTCACAGATGCAACACGCTATCTTAAAGCCCAGTCGAGAACAATTCCCAAACTATGAACAGCAGACACCAACTATGCCTGATTGCTTCACCCCTAAT TTCACCGATCATTTGCATAGATCATTCAATGACCCTCAGCTGTCAGCAATCCAATGGGCTGCAATGCATACAGCTGCTGGCACAAGCAGCGGTGTAACGA AAAGACAAGATCCATGGCCTTTTACTCTTGTGCAAGGGCCGCCTGGAACAGGTAAGACACATACAGTGTGGGGGATGCTCAATGTGATCCATCTGGTTCA GTATCAGCACTACTACACATCTTTGCTTAAAAAGTTAGCACCTCAGAGTTATAAGGTAGCCAATGAGAATAATTCTGAAAGTATTGTTGTTGGTTCAATT GATGAAGTTCTTCATAATATGGACCAGAATCTTTTTCGTTCTCTTTCAAAACTGTGCCCAAAGCCCAGAATGTTGGTCTGTGCTCCTTCTAATGCTGCAA CTGATGAGCTTTTATCACGAGTACTTGATCGTGGATTTATTGACGGTGAGATGAAAGTTTACAGACCAGATGTTGCTAGGGTTGGTGTTGATTCACAATC ACGTGCTGCCCAGGCAGTCTCAGTTGAACGGCGAACTGAACAGCTTTTAGTCAAGAGCCGTGAAGAAGTTTCCAAATGGATGCAAGATTTAAGAGGTCAG ATCATGGGCAATGCTGGTTCTCTGATGAAATCCGAGGACTGGGCTGCATTAATTACTGATGCGAAAGGAAGAAGCTGTTTCATGGACATGGATTCTCTGC CGAAAGATTTCCTTGTTTCCAAGGTAATGCCAGGAGGAGGTAAAGGTCCAGGAGCATCAAACGTAAGAAGTTTGAGATCTGGTGGACCGCGGTACAGCAG GCGGGGTTGA
AA sequence Show only first row Show all	>Lus10020914 pacid=23177952 polypeptide=Lus10020914 locus=Lus10020914.g ID=Lus10020914.BGIv1.0 annot-version=v1.0 MGSRGIIFDLNEPAAEDDETGNVSSQPQISPLPSTSQTSASVNSSIAAQATKDNLAFSHQSSMSGFQPFVRPKVTNDEVVLEQNTALDRISKFEPPLNLN NGYGRKTQPQLASGSTTFQPTEREEGEWVDTDGSAGSSQHLDGNGNLDASSCPEAKVVASRQREVKGSEASHALRLANLPAKRKIDHQKEAMLGKMRNRQ TMLINIDEVKQAETVKSLTPKRQLTSARTKESKTLPLAAGEKYNHSILKDQKQVELPSSEAGTSLEFSQAKSESNGEINSSQVDKFRRLNGDADSLDTQL PPVTRQSSWKQPIDMRHQKNFQMSNRRPPSNNQNPLDQKPGGKKSVHLKKTVLTGSSYHDTSVERLIREVTNEKFWHHPEDSELQCVPGQFESSGDYVSV FEPLLFEECRAQLYSTWEELSETNSHIMVRVKNVERRERGWYDVIVLSVNDCKWNFKEGDVAVLSNPKPGTVRSKRNLGSTSEDGDEPDKLDRVAGTVRR HIPLDNRDPPGAILHFYVGDSYDPYGKVDDDHILRKLQHRSTWYLTVLGSLATTQREYVALHAFCRLNSQMQHAILKPSREQFPNYEQQTPTMPDCFTPN FTDHLHRSFNDPQLSAIQWAAMHTAAGTSSGVTKRQDPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPQSYKVANENNSESIVVGSI DEVLHNMDQNLFRSLSKLCPKPRMLVCAPSNAATDELLSRVLDRGFIDGEMKVYRPDVARVGVDSQSRAAQAVSVERRTEQLLVKSREEVSKWMQDLRGQ IMGNAGSLMKSEDWAALITDAKGRSCFMDMDSLPKDFLVSKVMPGGGKGPGASNVRSLRSGGPRYSRRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30100			P-loop containing nucleoside t...		Lus10020914 [exp]	0	1
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10008796 [exp]	2.0	0.9708
AT3G11960			Cleavage and polyadenylation s...		Lus10013542 [exp]	2.0	0.9538
AT2G07360			SH3 domain-containing protein ...		Lus10008548 [exp]	2.4	0.9545
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	4.0	0.9560
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10033928 [exp]	6.9	0.9489
AT5G19400		SMG7	Telomerase activating protein ...		Lus10036041 [exp]	8.9	0.9062
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Lus10037656 [exp]	10.0	0.9214
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009712 [exp]	10.0	0.9505
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10014764 [exp]	10.4	0.9411
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10010209 [exp]	10.7	0.9409

Compare expression of checked genes

Lus10020914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.