Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58230 689 / 0 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G16780 400 / 1e-137 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35050 392 / 1e-134 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G19520 174 / 3e-49 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT4G29730 155 / 2e-42 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT2G19540 101 / 3e-23 Transducin family protein / WD-40 repeat family protein (.1) AT1G29260 83 / 2e-17 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT5G67320 82 / 2e-16 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT1G18830 67 / 9e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT2G32950 67 / 1e-11 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020916 [exp] 755 / 0 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 751 / 0 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 691 / 0 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10005074 [exp] 412 / 2e-142 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 400 / 4e-138 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027632 [exp] 147 / 2e-39 AT2G19520 815 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10011936 [exp] 125 / 1e-31 AT2G19520 577 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10024403 [exp] 89 / 4e-19 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10025341 [exp] 87 / 4e-18 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216200 [exp] 716 / 0 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 713 / 0 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G135100 [exp] 417 / 2e-144 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 409 / 3e-141 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.018G068200 [exp] 162 / 6e-45 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 159 / 5e-44 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G151800 [exp] 153 / 1e-41 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.007G094000 [exp] 103 / 8e-24 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.005G074400 [exp] 95 / 6e-21 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.004G057600 [exp] 90 / 6e-20 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF12265 [flax] [poplar] CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex
Representative CDS sequence Show only first row Show all	>Lus10020917 pacid=23178021 polypeptide=Lus10020917 locus=Lus10020917.g ID=Lus10020917.BGIv1.0 annot-version=v1.0 ATGGGGAAGGACGATGAGGAGATGAGAGGGGAGATGGAGGAAAGGCTTATCAACGAAGAGTACAAAATATGGAAAAAGAACACTCCTTTCCTCTACGACC TCGTCATTACCCACGCCCTCGAATGGCCTTCCCTTTCCGTCGAATGGTTGCCGGATCGCGACGAGCCTCCGGGCAAAGACTACTCCGTCCAGAAGATGAT CCTCGGCACCCACACCTCCGAAAACGAGCCTAATTACCTCATGCTCGCTCAGGTTCAGCTTCCCTCAGAAGACGCCGAGAATGACTCCCGAAATTACGAC GACGACCTCTCTAATTCGGGTGGCTTTGGTTCTGCCAGCGGCAAGGTCAGTCAATGCTTCAGTTTTTCATCCCCCCCAGTCTACGTCTTTGACTACAGCA AGCACCCTTCTAAACCTCCATTGGACGGAGCTTGCAGTCCAGATTTGAGGTTGAGTGGACACAACACTGAAGGTTACGGTCTTTCCTGGAGCACGTTCAA GCAAGGCCATTTACTCAGCGGTTCCGACGATGCACAGATTTGCTTGTGGGATATCAATGCTACTCCTAAGAATAAGACTCTTGACGCCACCCAGATTTTC AAGGTTCATGAAGGAGTTGTGGAAGATGTAGCGTGGCATCTGAGGCATGAGTACTTATTTGGTTCTGTGGGGGATGATCAGTACCTACTTATATGGGATA TTCGCAGCCCAGCTGTAACTAAACCTGTCCAGTCTGTTGTTGCTCATCAAAGTGAGGTGAACTGTTTGGCCTTCAATCCTTTCAATGAATGGGTTGTGGC AACTGGATCAACTGATAAGACTGTCAAATTGTTTGACTTACGCAAGATCAGTACTGCACTGCACACATTGGATTGTCACAAAGAAGAAGTCTTCCAAGTT GGCTGGAATCCAAAGAATGAGACCATCCTAGCTTCTTGTTGCCTTGGAAGGAGGCTCATGGTTTGGGATCTTAGCAGGATTGATGAGCAGCAAACTCCGG AGGATGCGGAAGATGGTCCGCCGGAGTTGCTCTTTATTCATGGTGGTCACACAAGTAAAATATCGGATTTTTCGTGGAATCCATGTGAAGACTGGGTTGT GGCGAGTGTGGCCGAAGATAACATCCTTCAGATATGGCAGATGGCTGAGAACATATACCATGATGAAGATGACTTACCTGTTGATGAATCCACCAAAGGT TCTTAG
AA sequence Show only first row Show all	>Lus10020917 pacid=23178021 polypeptide=Lus10020917 locus=Lus10020917.g ID=Lus10020917.BGIv1.0 annot-version=v1.0 MGKDDEEMRGEMEERLINEEYKIWKKNTPFLYDLVITHALEWPSLSVEWLPDRDEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPSEDAENDSRNYD DDLSNSGGFGSASGKVSQCFSFSSPPVYVFDYSKHPSKPPLDGACSPDLRLSGHNTEGYGLSWSTFKQGHLLSGSDDAQICLWDINATPKNKTLDATQIF KVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDIRSPAVTKPVQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKISTALHTLDCHKEEVFQV GWNPKNETILASCCLGRRLMVWDLSRIDEQQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPVDESTKG S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10020917 [exp]	0	1
AT3G15380			Plasma-membrane choline transp...		Lus10036620 [exp]	3.0	0.8684
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10040512 [exp]	6.2	0.8780
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10021043 [exp]	6.9	0.8524
AT5G64950			Mitochondrial transcription te...		Lus10004329 [exp]	12.0	0.8583
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10019360 [exp]	12.6	0.8453
AT3G55220		AtSAP130b, SAP1...	Arabidopsis thaliana spliceoso...		Lus10023443 [exp]	13.7	0.8723
AT5G05680		EMB2789, MOS7	MODIFIER OF SNC1,7, EMBRYO DEF...		Lus10028296 [exp]	17.5	0.8570
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10004105 [exp]	22.4	0.8537
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026919 [exp]	23.4	0.8520
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	23.9	0.8595

Compare expression of checked genes

Lus10020917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.