Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29760 475 / 1e-159 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 469 / 6e-158 SLO1 SLOW GROWTH 1 (.1) AT3G15930 440 / 1e-146 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G13600 416 / 5e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 411 / 1e-133 unknown protein AT4G14820 402 / 2e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 397 / 2e-129 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04750 384 / 3e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31430 377 / 2e-123 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G12770 379 / 6e-123 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033458 [exp] 676 / 0 AT2G29760 221 / 2e-65 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 464 / 4e-155 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 461 / 3e-154 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002288 [exp] 434 / 2e-145 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10004052 [exp] 429 / 4e-143 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10033026 [exp] 430 / 5e-142 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 415 / 2e-137 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 397 / 2e-129 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 393 / 7e-128 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G217900 [exp] 785 / 0 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.009G044700 [exp] 504 / 9e-171 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G019500 [exp] 494 / 9e-168 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.003G031600 [exp] 483 / 2e-162 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G088600 [exp] 447 / 1e-149 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G086200 [exp] 432 / 3e-143 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 427 / 4e-141 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G135600 [exp] 423 / 5e-141 AT4G38010 672 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G071800 [exp] 426 / 7e-141 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G103600 [exp] 412 / 2e-136 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020918 pacid=23177953 polypeptide=Lus10020918 locus=Lus10020918.g ID=Lus10020918.BGIv1.0 annot-version=v1.0 ATGCTCCAACTTAAGCAAATCCAAGCCCTCATGACCTCCACGAGCCTCATTACTCATACTTTCCCCGTCAGCCGCGCCTTAGCTTTTTGTGCTCTAGCTG ATGCTGGAGATATCGACCATGCCCATGCTCTGTTCATCAAGATTCAGAATCCTAATACCTACATGTGGAACACCATAATTAGAGGTTATGCCAAACGTAA AATCCCCAGGATTGGGTTTTCTATCTTTCGCCGCATGCTTCTGGAACGGGCATCAGCCATGGACGCCAGGACCTTTGCCTCTACGCTCAAACTCTGCGAG CAATTCTCTACTTCTATTCATGGGAAATCAGTGCATTCACTGGTTTGGAAAACAGGGTTTTCTGGCTCTTTGTTGGTGGGTAATGTGTTGATTCATTTTT ATGGTGTGCATCGGTTGCTAGAATTATCTGCCAAGGTGTTCGATGAAATCCCTGTTAAGGATGCTGTTTCTTGGACTTCCATGATTGATGAGTATGCAGC TACTAATTGCTACACCGAAGCCCTCAAGCATTTCGATTGCATGATTTCTGCTGGTGTTGAGCCCAACCAGATAACAATGATCACAGTGCTTTCTGCTTGT TCTCAGATGAGAGATTTAGAAATGGGGAAGAGCATTCATGCTTACATTACAGGTAAATGTATCAACTTTACAATGAATTTGATGAATGCCATTTTAAATA TGTATATCAAGTGCGGTTCCATGGTTGATGCTAACGAGTTTTTCGAGAAGATGGAAGTTAAAGATGTATTCTCTTGGACTAGCATGGTTAATGGATATGC CAAACGCGGTGAGCTAGAATCAGCGAGGCTGTTATTTGACGAGATGCCTAAAAGGAATGTAGTTTCTTGGAATGCCATGATATCTGGGTATTCCCAAAGC AACAATCCAAAGGAAGCTTTAGATTTATTTCACGCCATGATAGAAGCTAGATTAGTTCCAACGGAGGATACATTAGTCTGTGTACTCTCTGCCTGTGGTC AATTGGGTTCTGTGGATTTGGGTCAGTGGATTCATCTCCACTACATTGACAATAAACTGATCAAGAGCAGTGTAATCATAGCTAATGCATTTATTCACAT GTATGCTAAATGTGGGTGGATAGATGCAGCTGCTAGCATTTTCCGCAGCATGCCAGAAAGAGATTTGGCTTCTTGGAATTCAATAATTGCAGCATATTCT GTTCATGGAGACCCCAAACAAGCTCTCTGCCTTTTCCACCAGATGCAACTCTCCAAGTTCAGACCTGACAGTATTACTTTTGTTGGAGTCTTAGCAGCCT GCAGCCATGGAGGACTAGTGGCAGAGGGCCGCGAGTATTTTCAGATCATGGAAAGAGAATTTGGTATTAAACCAAAGATGGAACACTATGCTTGTATGAT TGATCTGCTTGGTCGGGCTGGGCTTCTAGAAGATGCATATAAGCTGATAAGCTGGATGCCAATGGCACCGGGGCAAGCTGCCTGGGGTGCCCTTTTGAAT GCTTGCAGGATGCATGGGAATATTGGACTGGCCAAGCTTGCTGCTCATAAACTTTTTGAGTTAGATCCTGAAGACAGTGGTATATATGTTTTGTTAGCAA CCGTTTGTGCCAGGGACAAGAGATGGGGCGATGTGAGTATGGTAAGAAATATAATGAAGGAAAAGGGCATTAAGAAAACTCCCGGTCGTAGCTTGATAGA GATTGAAGGGGATTTCCATGAGTTCCTAGCTGGAGACACTTCACATCCACAGTTTCATGGTATTCGTCAAGTTTTGAAGGACATATATATGTTGTCGAAA ATGGAAGATGCTGACTCCGATGAGTCTCTAACTTACATTTTATAA
AA sequence Show only first row Show all	>Lus10020918 pacid=23177953 polypeptide=Lus10020918 locus=Lus10020918.g ID=Lus10020918.BGIv1.0 annot-version=v1.0 MLQLKQIQALMTSTSLITHTFPVSRALAFCALADAGDIDHAHALFIKIQNPNTYMWNTIIRGYAKRKIPRIGFSIFRRMLLERASAMDARTFASTLKLCE QFSTSIHGKSVHSLVWKTGFSGSLLVGNVLIHFYGVHRLLELSAKVFDEIPVKDAVSWTSMIDEYAATNCYTEALKHFDCMISAGVEPNQITMITVLSAC SQMRDLEMGKSIHAYITGKCINFTMNLMNAILNMYIKCGSMVDANEFFEKMEVKDVFSWTSMVNGYAKRGELESARLLFDEMPKRNVVSWNAMISGYSQS NNPKEALDLFHAMIEARLVPTEDTLVCVLSACGQLGSVDLGQWIHLHYIDNKLIKSSVIIANAFIHMYAKCGWIDAAASIFRSMPERDLASWNSIIAAYS VHGDPKQALCLFHQMQLSKFRPDSITFVGVLAACSHGGLVAEGREYFQIMEREFGIKPKMEHYACMIDLLGRAGLLEDAYKLISWMPMAPGQAAWGALLN ACRMHGNIGLAKLAAHKLFELDPEDSGIYVLLATVCARDKRWGDVSMVRNIMKEKGIKKTPGRSLIEIEGDFHEFLAGDTSHPQFHGIRQVLKDIYMLSK MEDADSDESLTYIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020918 [exp]	0	1
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Lus10032648 [exp]	2.0	0.8566
AT3G11460			Pentatricopeptide repeat (PPR)...		Lus10022703 [exp]	11.5	0.8607
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	13.5	0.8678
AT5G63290			Radical SAM superfamily protei...		Lus10001104 [exp]	20.7	0.8440
AT1G73970			unknown protein		Lus10000648 [exp]	21.6	0.8527
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Lus10032647 [exp]	24.2	0.8573
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10029620 [exp]	25.9	0.8448
AT3G63370		OTP86	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10014707 [exp]	30.9	0.8392
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Lus10043104 [exp]	32.0	0.8519
AT3G27180			S-adenosyl-L-methionine-depend...		Lus10041566 [exp]	33.1	0.8486

Compare expression of checked genes

Lus10020918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.