Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000964 [exp] 65 / 5e-14 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020919 pacid=23177996 polypeptide=Lus10020919 locus=Lus10020919.g ID=Lus10020919.BGIv1.0 annot-version=v1.0 ATGTCTAACCTCGCAGAACCCATCGAGTCTCTGACCAAGAACGGGATTACCGACCTCAAGATGGCAGCGGCTGAGCCGCAGCCTCAGACAGACAGATATT ATGCGACAACACTGCCCAATCTCAAATTGGCCAACGGGGGAGTAGTTGGACGGGGTGGACATTGCGCAGCACAGGAAGGGTCCAGATATGAACACGCAGA GGTTGGACTTCCATGGCGCTATGCAAAAAATTTGATCGAGGCGGACGAGTTGATTCGAAAGCAATTTCCTTCCAAGGAACTGATAGATAACTTTATAACA GCGAAGACTTATGTGTGCCACAATTTGCTCACGATGAATGACGAACTCATGACTGCCATAAATCTGCTGAAAGTGAGTGGTCACCCTAAGGTCCAGGTTA TTGTAGATTATTTCACTTCAGCAATATCATGA
AA sequence Show only first row Show all	>Lus10020919 pacid=23177996 polypeptide=Lus10020919 locus=Lus10020919.g ID=Lus10020919.BGIv1.0 annot-version=v1.0 MSNLAEPIESLTKNGITDLKMAAAEPQPQTDRYYATTLPNLKLANGGVVGRGGHCAAQEGSRYEHAEVGLPWRYAKNLIEADELIRKQFPSKELIDNFIT AKTYVCHNLLTMNDELMTAINLLKVSGHPKVQVIVDYFTSAIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020919 [exp]	0	1
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10029484 [exp]	13.0	0.4919
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10032597 [exp]	15.1	0.6157
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10002101 [exp]	18.6	0.5625
AT4G12680			unknown protein		Lus10016056 [exp]	39.7	0.5194
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10024389 [exp]	46.7	0.5141
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10026678 [exp]	47.5	0.5010
AT5G56610			Phosphotyrosine protein phosph...		Lus10034998 [exp]	64.1	0.4996
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005660 [exp]	96.3	0.4289
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10029335 [exp]	116.4	0.4173
					Lus10030519 [exp]	120.6	0.4359

Compare expression of checked genes

Lus10020919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.