Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78150 329 / 1e-113 unknown protein AT1G35780 310 / 5e-106 unknown protein AT4G39860 287 / 6e-97 unknown protein AT2G22270 180 / 2e-54 unknown protein AT2G22260 42 / 0.0004 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033456 [exp] 479 / 1e-172 AT1G35780 362 / 1e-126 unknown protein Lus10041695 [exp] 303 / 6e-103 AT4G39860 399 / 1e-140 unknown protein Lus10024053 [exp] 300 / 4e-95 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2) Lus10009931 [exp] 86 / 3e-21 AT1G35780 107 / 2e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G095300 [exp] 391 / 5e-138 AT1G35780 364 / 2e-127 unknown protein Potri.005G165500 [exp] 391 / 1e-137 AT1G35780 357 / 2e-124 unknown protein Potri.005G076000 [exp] 309 / 2e-105 AT4G39860 354 / 3e-123 unknown protein Potri.007G092400 [exp] 286 / 1e-96 AT4G39860 384 / 4e-135 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020921 pacid=23177968 polypeptide=Lus10020921 locus=Lus10020921.g ID=Lus10020921.BGIv1.0 annot-version=v1.0 ATGGAGCGGAACACACCGGTGAGGAAGCCCCACAATTCCACTGCAGATCTGCTCACTTGGTCCGAGACTCCACCTCCTGAATCTCCCTCACTCTCCTCCG CTCCTCGCTCCGCCGCAAGATCCCACCAACCGTCGGATGGAATCAGCAAGGTTGTGTTTGGTGGTCAGGTGACTGACGAAGAATCTGTCAGTCTTAACAA ACGGAAACCATGTTCTGGATACAAAATGAAAGAAATGACAGGCAGTGGCATTTTCGCTGCTAATGGAGAAGACGAGGAAGATGAAACTGGAAATGGGAAC CTCACCCCTAATGCAAGAACGGGGATAAGAATGTATCAGCAAGCTGTTGCTGGAATCAGTCATATTTCTTTTGGAGAGGGAGAGAGTGTCTCCCCGAAAA AGCCGGCTTCCTTGCCCGAGGTGGCCAAGCAGCGTGAGCTAAGCGGTACGTTGGAAACCGAGGCAGAGTTAGAGGCCAGGCTGAAGAAACAGCTTTCTGA TGCCAAATGCAAAGAGCTCAGTGGACATGACATCTTCGCTCCTCCACCTGAAATTTTGCCTCGACCAACCGGTGTCAGGGCTTTGGCATTGAAGGAAAGC ATAGAGTTGGGTGAACCAGCTCTACGTGATCCTGCTAAAGGCCAGACTTCATCAGAGGACAGTGCGATGAAGACTGCAAAGAAAATATACGACAAGAAGT TCTCGGAGCTCTCAGGAAACGACATCTTCAAAGGTGACGTCCCTGCAACATCAGCGGAGAAGCCAATAAGTGATGCGAAATTGAGAGAGATAAGTGGGAA CAACATATTTGCTGATGGCAAGGCGGAGCATCGAGACTACTTGGGTGGCGTACGTAAACCTCCTGGTGGGGAGAGTAGCATTGCCTTGGTTTAA
AA sequence Show only first row Show all	>Lus10020921 pacid=23177968 polypeptide=Lus10020921 locus=Lus10020921.g ID=Lus10020921.BGIv1.0 annot-version=v1.0 MERNTPVRKPHNSTADLLTWSETPPPESPSLSSAPRSAARSHQPSDGISKVVFGGQVTDEESVSLNKRKPCSGYKMKEMTGSGIFAANGEDEEDETGNGN LTPNARTGIRMYQQAVAGISHISFGEGESVSPKKPASLPEVAKQRELSGTLETEAELEARLKKQLSDAKCKELSGHDIFAPPPEILPRPTGVRALALKES IELGEPALRDPAKGQTSSEDSAMKTAKKIYDKKFSELSGNDIFKGDVPATSAEKPISDAKLREISGNNIFADGKAEHRDYLGGVRKPPGGESSIALV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35780			unknown protein		Lus10020921 [exp]	0	1
AT3G07210			unknown protein		Lus10025908 [exp]	1.4	0.9139
AT2G41640			Glycosyltransferase family 61 ...		Lus10018048 [exp]	1.7	0.8763
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10032241 [exp]	8.5	0.8560
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Lus10005327 [exp]	9.1	0.8921
AT4G24330			Protein of unknown function (D...		Lus10019958 [exp]	11.5	0.8169
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10028511 [exp]	12.0	0.8354
AT2G41350		AtAUG1, EMB2819	EMBRYO DEFECTIVE 2819, augmin ...		Lus10043401 [exp]	12.8	0.8280
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10023995 [exp]	13.3	0.8614
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10017217 [exp]	13.6	0.8298
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10002273 [exp]	13.7	0.8338

Compare expression of checked genes

Lus10020921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.