Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05420 1606 / 0 DDB1A damaged DNA binding protein 1A (.1.2) AT4G21100 1571 / 0 DDB1B damaged DNA binding protein 1B (.1) AT3G55200 152 / 5e-37 AtSAP130a Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT3G55220 152 / 5e-37 AtSAP130b, SAP130b, AtSAP130ab Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) AT3G11960 86 / 1e-16 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) AT5G51660 74 / 8e-13 CPSF160, ATCPSF160 cleavage and polyadenylation specificity factor 160 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033455 [exp] 1545 / 0 AT4G05420 1519 / 0.0 damaged DNA binding protein 1A (.1.2) Lus10023443 [exp] 142 / 6e-34 AT3G55220 2237 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Lus10040321 [exp] 135 / 7e-32 AT3G55220 2125 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 b, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Lus10013542 [exp] 109 / 8e-24 AT3G11960 1640 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Lus10017295 [exp] 88 / 3e-17 AT3G11960 1633 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2) Lus10031692 [exp] 79 / 2e-14 AT5G51660 2142 / 0.0 cleavage and polyadenylation specificity factor 160 (.1) Lus10031111 [exp] 78 / 3e-14 AT5G51660 2134 / 0.0 cleavage and polyadenylation specificity factor 160 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357900 [exp] 1639 / 0 AT4G05420 1995 / 0.0 damaged DNA binding protein 1A (.1.2) Potri.008G048900 [exp] 154 / 1e-37 AT3G55200 2254 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Potri.010G212100 [exp] 150 / 1e-36 AT3G55200 2243 / 0.0 Arabidopsis thaliana spliceosome-associated protein 130 a, Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1) Potri.012G022700 [exp] 86 / 9e-17 AT5G51660 2117 / 0.0 cleavage and polyadenylation specificity factor 160 (.1) Potri.006G197200 [exp] 79 / 2e-14 AT3G11960 1679 / 0.0 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.1), Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF03178 [flax] [poplar] CPSF_A CPSF A subunit region
Representative CDS sequence Show only first row Show all	>Lus10020922 pacid=23177890 polypeptide=Lus10020922 locus=Lus10020922.g ID=Lus10020922.BGIv1.0 annot-version=v1.0 ATGAGTGTATGGAACTACGTGGTCACCGCTCATAAGCCCACCAATGTCACCCACTCCTGCGTCGGCAATTTCACCGGTCCGCAGGAGCTCAATCTCATCA TAGCAGTGTTTGGTGCTGCTTCTGGTAGAATGATTGATAGTTTATCAATTGAATGGAAACCCGATGTAGCTGATTTCGCACACTTGTTTTCAGGAAATCC CTTGTTGGACGTCCCTATTTATGGAAGAATTGCCACACTTGAGCTTTTTCGTCCTCATGGTGAAGCACAAGACTTTCTGTTCATCGCCACTGAGAGATAC AAGTTTTGTGTTCTTCAGTGGGATTCTGAAGCATCCGAGCTTGTTACTAGAGCAATGGGGGATGTATCGGACCGCATAGGCCGTCCAACTGACAATGCTC AGATAGGGATAATTGATCCTGATTGTCGGCTGATAGGACTGCACTTATATGATGGTCTGTTTAAGACTTTGTTCTGTCATTATGCCATCCACAATCAGCT TGTGCAAGTAGGGACTACTAATGGTCGTGTGGTATTTTGTGTTGATTATCTTGTTCAACTTCAAGTTCTGGATATCAAATTTCTATTTGGTTGTGTGAAG CCTACAATTGTTGTTCTGTATCAGGATAATGTTGCTACTGCTAATGCTAGCCAGGTTGGATTGAATTATGTGATTTTAGATGTTTTATTGGCAACTGGTG GTGGCAAGTTAGTTTACTTGGAAATTGGTGATGGGATGTTGACTGAGATAAAGCACACGCAGCTGGAATATGAGATATCATGCCTTGATATTAATCCCAT TGGTGAAAATAACCCCATGGGGGAAACCACAACCCCCAGCAAATTGGCTGTCGTTGGAATGTGGACAGACATAAGTGTTAGGATATTTTCTCTGCCGGAC CTAAGTATTGTGAGAAAAGAGTACCTGGGAGGAGAAATAATTCCACGTTCGGTGCTTCTATGTGCTTTTGAAGGGTATTTTGAGTATCTAACTCATGAGA AAGAGAAGGTCACTGGATTGAAGATTGAGCTTTTGGGAGAGACTTCTGTTCCATCAACCATATCATACCTTGATAATGCATTTGTCTTCATTGGTTCTAG TTTTGGTGATTCACAGGTGCTAACCATCTACTGTGGTGCAATGCAGCTTATAAAGCTCAATTTACAACCTGATAACAGAGGTTCATATGTGGAAGTTCTG GAAAGGTATGTCAATCTGGGACCCATAGTGGACTTTTGCGTGGTGGATCTTGAAAGGCAAGGGCAGGGTCAGGTTGTAACATGTTCTGGAGCTTACAAGG ATGGTTCGCTTCGTATAGTCCGGAATGGAATAGGAATCAATGAACAGGCATCTGTAGAGCTTCAAGGCATTAAAGGAATGTGGTCTTTGAGATCTTCCAC CAACGATCCATTTGACACCTTCCTTGTTGTCAGTTTTATTAGTGAGACTAGAGTTCTGGCAATGAACCTTGAGGATGAGTTGGAAGAAACTGAAATTGAA GGTTTTAATTCACAAGTGCAGACTTTGTTCTGTCATTATGCCATCCACAATCAGCTTGTGCAAGTTACTTCAAGCTCAGTTATACTAGCCAGTTCCACAA CGAGAGAACGTCGGTGGGAGTGGAGTGCTCCTTCAGGCCATTCTATTAATGTTGCTACTGCTAATGCTAGCCAGTATGAGTGCTTTCTTCTTGATATTAC TCCTGTGGTAAAAAACCAAAACCCCAGCAAATTGGCTGTCGTTGGAATGTGGACAGACATAAGTGTTAGGATATTTTCTCTGCCGGACCTAAGTATTGTG AGAAAAGAGTACCTGGGAGGAGAAATAATTCCACGTTCGGTGCTTCTATGTTCTTTTGAAGGGATATCTTACTTGCTATGTGCCCTTGGAGATGGTCATC TCTTAAACTTTCAATTGAACTTGAGCAATGGCGAGTTGGCCGATAGGAAAAAGGTATCCTTGGGAACGCAGCCTATAACACTTCGGACTTTCTCATCTAA GAATGCGACACATGTATTCGCTGCATCAGATAGGCCAACTGTGATATACAGTAGTAACAAGAAACTATTGTACAGCAATGTAAACTTAAAAGAAGTCAGT CATATGTGTCCTTTCAACTCTGCTGCTTTCCCAGACAGCCTTGCTATTGCAAAAGAAGGAGAACTTACCATTGGCACTATAGATGAGATCCAAAAGCTTC ATATCCGGACAATTCCGCTGGGAGAGCATGCTAGGAGGATCTGCCATCAGGAACAGTCTCGAACGTTTGCCATTTGTAGCTTGAAGCACCAAACAAGTAC AGAAGAATCGGAAACTCACTTTGTGCGCTTATTAGACGATCAAACCTTTGAATCTCTATCTGCCTACCAACTGGATCCATTTGAGTACGGGTGTTCCTTG CTTAGCTGCTCCTTCTCAGATGACATCAATGTGTACTATTGTGTTGGGACAGCTTATGTTCTACCAGAAGAAAATGAGCCTACAAAGGGAAGGATTTTAG TGTTCATTATTGAAGACGGGAAGTTGCAGCTCATCACTGAGAAAGAAACGAAAGGGGCCGTTTATACTTTGAATGCTTTTAACGGAAAGCTGCTTGCTGC CATAAATCAGAAAATCCAACTATATAAATGGATGCTTAGGGATGATGGAAGCCGTGAATTGCAGTCAGAGTGTGGACATCATGGACATATACTTGCGCTC TATGTGCAAACTCGTGGAGATTTCATCGTTGTCGGTGATCTGATGAAGTCAATATCCTTGCTAATTTATAAGCATGAAGAAGGTGCCATTGAAGAGCGAG CTCGGGACTACAATGCAAACTGGATGTCGGCGGTTGAAATCCTCGACGACGACATCTACATTGGTTCGGAGAACAATTACAACCTATTTACAGTGCGGAA GAACAGCGAAGGTGCCACAGACGAGGAGCGAGGCCGGCTGGAGGTCGTTGGGGAATATCACCTGGGCGAATTTGTGAACCGATTCAGGCATGGATCGCTG GTGATGCGTCTGCCCGATTCAGACGTGGGGCAGATTCCAACGGCGATATTCGGTACTATCAACGGTGTGATTGGGGTGATTGCTTCACTTCCTCATGACC AGTACCTCTTCTTGGAGAAGCTCCAGACCAACCTAAGGAAGGTGATAAAGGGAGTTGGAGGATTAAGCCACGAGCAGTGGAGATCGTTCAACAACGAGAA GCGAACCGCGGATGCCAAGAACTTTTTGGACGGAGATCTAATCGAGTCGTTCCTTGATCTGAGCAAGATTAGAATGGATGAAATCTCCAAGGGAATGGGT GTCTCGGTGGAAGAACTCTGTAAGAGAGTGGAAGAGCTGACAAGGCTTCACTGA
AA sequence Show only first row Show all	>Lus10020922 pacid=23177890 polypeptide=Lus10020922 locus=Lus10020922.g ID=Lus10020922.BGIv1.0 annot-version=v1.0 MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAVFGAASGRMIDSLSIEWKPDVADFAHLFSGNPLLDVPIYGRIATLELFRPHGEAQDFLFIATERY KFCVLQWDSEASELVTRAMGDVSDRIGRPTDNAQIGIIDPDCRLIGLHLYDGLFKTLFCHYAIHNQLVQVGTTNGRVVFCVDYLVQLQVLDIKFLFGCVK PTIVVLYQDNVATANASQVGLNYVILDVLLATGGGKLVYLEIGDGMLTEIKHTQLEYEISCLDINPIGENNPMGETTTPSKLAVVGMWTDISVRIFSLPD LSIVRKEYLGGEIIPRSVLLCAFEGYFEYLTHEKEKVTGLKIELLGETSVPSTISYLDNAFVFIGSSFGDSQVLTIYCGAMQLIKLNLQPDNRGSYVEVL ERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTNDPFDTFLVVSFISETRVLAMNLEDELEETEIE GFNSQVQTLFCHYAIHNQLVQVTSSSVILASSTTRERRWEWSAPSGHSINVATANASQYECFLLDITPVVKNQNPSKLAVVGMWTDISVRIFSLPDLSIV RKEYLGGEIIPRSVLLCSFEGISYLLCALGDGHLLNFQLNLSNGELADRKKVSLGTQPITLRTFSSKNATHVFAASDRPTVIYSSNKKLLYSNVNLKEVS HMCPFNSAAFPDSLAIAKEGELTIGTIDEIQKLHIRTIPLGEHARRICHQEQSRTFAICSLKHQTSTEESETHFVRLLDDQTFESLSAYQLDPFEYGCSL LSCSFSDDINVYYCVGTAYVLPEENEPTKGRILVFIIEDGKLQLITEKETKGAVYTLNAFNGKLLAAINQKIQLYKWMLRDDGSRELQSECGHHGHILAL YVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYIGSENNYNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSL VMRLPDSDVGQIPTAIFGTINGVIGVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFNNEKRTADAKNFLDGDLIESFLDLSKIRMDEISKGMG VSVEELCKRVEELTRLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	0	1
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	1.0	0.9225
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10009912 [exp]	2.2	0.8760
AT4G16440			ferredoxin hydrogenases (.1)		Lus10038798 [exp]	2.4	0.8992
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	2.8	0.8974
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	3.9	0.8985
AT5G08560			transducin family protein / WD...		Lus10001410 [exp]	4.1	0.8463
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10008356 [exp]	6.2	0.8425
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	7.3	0.8751
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032871 [exp]	8.3	0.8335
AT1G11060			WAPL (Wings apart-like protein...		Lus10018478 [exp]	8.5	0.8616

Compare expression of checked genes

Lus10020922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.