Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34750 423 / 5e-151 Protein phosphatase 2C family protein (.1) AT1G22280 420 / 1e-149 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT1G78200 355 / 3e-124 Protein phosphatase 2C family protein (.1.2) AT2G20630 339 / 5e-118 PIA1 PP2C induced by AVRRPM1 (.1.2) AT4G28400 335 / 4e-116 Protein phosphatase 2C family protein (.1) AT3G15260 331 / 2e-114 Protein phosphatase 2C family protein (.1.2) AT2G34740 262 / 8e-87 Protein phosphatase 2C family protein (.1.2) AT4G31750 222 / 2e-71 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 221 / 2e-70 Protein phosphatase 2C family protein (.1) AT5G24940 223 / 5e-70 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033453 [exp] 468 / 1e-168 AT1G34750 369 / 7e-130 Protein phosphatase 2C family protein (.1) Lus10039853 [exp] 335 / 4e-116 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10018618 [exp] 333 / 2e-115 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10008556 [exp] 329 / 2e-113 AT4G28400 352 / 1e-122 Protein phosphatase 2C family protein (.1) Lus10040565 [exp] 327 / 1e-112 AT4G28400 359 / 1e-125 Protein phosphatase 2C family protein (.1) Lus10028094 [exp] 326 / 4e-112 AT4G28400 360 / 8e-126 Protein phosphatase 2C family protein (.1) Lus10005405 [exp] 289 / 3e-98 AT3G15260 370 / 3e-130 Protein phosphatase 2C family protein (.1.2) Lus10038455 [exp] 260 / 6e-87 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2) Lus10009210 [exp] 254 / 3e-83 AT3G15260 300 / 4e-101 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G164600 [exp] 462 / 2e-166 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 458 / 6e-165 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.017G013300 [exp] 338 / 2e-117 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.001G398100 [exp] 337 / 4e-117 AT3G15260 469 / 7e-169 Protein phosphatase 2C family protein (.1.2) Potri.006G081400 [exp] 335 / 5e-116 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.011G116700 [exp] 333 / 2e-115 AT3G15260 439 / 5e-157 Protein phosphatase 2C family protein (.1.2) Potri.018G150800 [exp] 327 / 1e-112 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 222 / 1e-71 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 220 / 6e-71 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.015G019200 [exp] 214 / 7e-68 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10020924 pacid=23177951 polypeptide=Lus10020924 locus=Lus10020924.g ID=Lus10020924.BGIv1.0 annot-version=v1.0 ATGACTGTTGTCCTTTCTGTGATCCAGATCGCTGGAGGCCGTTCCTCTTCTAGCTCCGGAAGAGGAAAGAACCACGACGGTCTAATCAAGTATGGTTTCA GCTTGGTAAAAGGGAAAGCTAATCATCCCATGGAAGATTATCATGTTGCGAAATTTGTGCGGATTCAAGAGAACGAGTTAGGGCTTTTTGCTATCTATGA TGGCCATTTGGGAGATAGTGTACCTGCGTACTTACAGAAACATCTGTTTCCTAATATCTTGAAGGAGGATGAGTTCTGGGCGTTTCCAGACAGGTCTATT TCGAAAGCCTATGAAAGGACAGACCAGGCTATACTCTCCCAAGCTTCCAATCTGGGACGAGGTGGCTCTACAGCTGTTACTGCAATCTTAATGAATGGCC AAAGGTTATTGGTTGCTAATGTCGGGGACTCGAGGGCAGTTCTATCAAGAGGAGGCCAAGCAATACAAATGAGCATCGATCACGAACCTAGCACCGAGAG AAGCAGCATAGAGGACCGGGGTGGCTTTGTTTCGAACATGCCAGGAGATGTTCCGAGAGTCAACGGTCAGCTGGCAGTTTCTCGTGCTTTCGGGGACAAA AGCCTCAAGTCTCATCTGAGATCAGATCCAGATGTCCGCGAAACCAACATTGACAACAGTACAGAGTTTCTGATCCTTGCCAGTGACGGCCTGTGGAAGG TTATGTCGAATCAGGAGGCGGTTGATATAGCGAAAAAGAGTAGAGACCCACAGAAAGCAGCAAGGCAGCTGACAACGGAGGCAGTCTACAGGGAGAGCAA GGACGATATATCATGTGTTGTTATTAGATTTAGGGGGTGA
AA sequence Show only first row Show all	>Lus10020924 pacid=23177951 polypeptide=Lus10020924 locus=Lus10020924.g ID=Lus10020924.BGIv1.0 annot-version=v1.0 MTVVLSVIQIAGGRSSSSSGRGKNHDGLIKYGFSLVKGKANHPMEDYHVAKFVRIQENELGLFAIYDGHLGDSVPAYLQKHLFPNILKEDEFWAFPDRSI SKAYERTDQAILSQASNLGRGGSTAVTAILMNGQRLLVANVGDSRAVLSRGGQAIQMSIDHEPSTERSSIEDRGGFVSNMPGDVPRVNGQLAVSRAFGDK SLKSHLRSDPDVRETNIDNSTEFLILASDGLWKVMSNQEAVDIAKKSRDPQKAARQLTTEAVYRESKDDISCVVIRFRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34750			Protein phosphatase 2C family ...		Lus10020924 [exp]	0	1
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	3.5	0.9114
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10002215 [exp]	4.0	0.8906
AT3G09830			Protein kinase superfamily pro...		Lus10026524 [exp]	4.2	0.8877
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10003321 [exp]	4.5	0.9175
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10011836 [exp]	4.7	0.8965
AT4G35110			Arabidopsis phospholipase-like...		Lus10042396 [exp]	5.0	0.9263
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10017318 [exp]	5.9	0.9056
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Lus10031054 [exp]	9.8	0.8780
AT3G61800			unknown protein		Lus10004000 [exp]	9.9	0.9007
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Lus10014150 [exp]	12.1	0.8434

Compare expression of checked genes

Lus10020924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.