Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34770 260 / 1e-86 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033452 [exp] 466 / 3e-167 AT1G34770 266 / 6e-90 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G164300 [exp] 322 / 8e-111 AT1G34770 322 / 2e-112 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01454 [flax] [poplar] MAGE MAGE family
Representative CDS sequence Show only first row Show all	>Lus10020925 pacid=23177990 polypeptide=Lus10020925 locus=Lus10020925.g ID=Lus10020925.BGIv1.0 annot-version=v1.0 ATGAGTCATGACCATGACTCCAGAGTCATGGCAATTGGCAAACGGGCTGGCTATTGGGCTTTGAATTCAGCTGCTAGTGGGCTTACGACACTGGAAATAA AAAAACACTTCTCCCGCCACCAGCGACGAACGACTTCCCTCATCCAATCCTCGTCCGGTGGTGGTCCGACTGCTGGTGATTTTTTATTTTGCTGCTCCCG CATTCTTCTCCCCGCCGACTCCTTCCCTGAAAAAGATAAGCTCGTCGCTGAAGTGATCCGGCATGTGCTTTTCAAGACTCACCACAACTCTGGGTGCCCC ATTAAGAGGGAGGAGCTCACTCAGATCGTTACTAGAAACTACCATCAGCGTCTCCTTCCTGCTCTGGTCATCAAAGAGGCCATCGATAAGCTTTCCTCCA TTTTCGGTTTGGAGATGAGGGAGCTTCAAAGGGCTCGTCCTGTCTCAAATAACCATGCCCGCGGCTCTACTCAGCAAGGTTCTGCTGATGCGAAGTCCTA CGTCGTTATGAGTAAACTACCTGCTGATGTGTATAGGAAGTATATTGAGGACGTAAATACTGCACATCTCACTGGCTTTTCTTTCGTTGTGATTAGCATT GTGCAACTTTCTGGAGGCCAATTACCGGAAGAAAATCTCTGGCATCAATTGACCCGATTGGGGCTGCATGAAACAGATGGGTTCCATCCTGTCCTTGGAA ATGTAAAGCAGGCAGTGGAGACGCTTGTGCAACAAAGGTCGGGGAGTGATCACCATCGTGTATGTTTCAGGTATCTACAGAAGGGCAAAGTGAATGGTCC TGATGGTAGTACTATTAGTTATGAGCTTGCTGAGAGAGCATTAGATGAACCAGTGAGTGAGAAGATAAAGGAGTACATAGCCCAGGTACTGCCATTGAGA AGCTTGGCAACTTCTGCCATTTTTTTATATAATGACTTGAAATTAATTAACATATGTACTCTATGGTTGCAGATTGCAAAAGGTGAGTTGCTCGCTTAG
AA sequence Show only first row Show all	>Lus10020925 pacid=23177990 polypeptide=Lus10020925 locus=Lus10020925.g ID=Lus10020925.BGIv1.0 annot-version=v1.0 MSHDHDSRVMAIGKRAGYWALNSAASGLTTLEIKKHFSRHQRRTTSLIQSSSGGGPTAGDFLFCCSRILLPADSFPEKDKLVAEVIRHVLFKTHHNSGCP IKREELTQIVTRNYHQRLLPALVIKEAIDKLSSIFGLEMRELQRARPVSNNHARGSTQQGSADAKSYVVMSKLPADVYRKYIEDVNTAHLTGFSFVVISI VQLSGGQLPEENLWHQLTRLGLHETDGFHPVLGNVKQAVETLVQQRSGSDHHRVCFRYLQKGKVNGPDGSTISYELAERALDEPVSEKIKEYIAQVLPLR SLATSAIFLYNDLKLINICTLWLQIAKGELLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34770			unknown protein		Lus10020925 [exp]	0	1
AT4G18593			dual specificity protein phosp...		Lus10013914 [exp]	7.7	0.8083
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10018037 [exp]	12.9	0.8279
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	14.4	0.8040
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	15.8	0.8220
AT1G77270			unknown protein		Lus10042760 [exp]	24.5	0.7782
AT3G22520			unknown protein		Lus10041202 [exp]	27.6	0.8189
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10036045 [exp]	35.7	0.8029
AT1G52310			protein kinase family protein ...		Lus10040381 [exp]	36.4	0.7996
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011742 [exp]	38.5	0.7559
AT4G22350			Ubiquitin C-terminal hydrolase...		Lus10010490 [exp]	43.4	0.7863

Compare expression of checked genes

Lus10020925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.