Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09430 318 / 3e-108 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 311 / 2e-105 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 293 / 3e-98 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 171 / 6e-51 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 167 / 3e-49 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 157 / 1e-45 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 153 / 9e-44 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 144 / 2e-40 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 129 / 9e-35 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 47 / 9e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023147 [exp] 297 / 4e-100 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 271 / 6e-90 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 204 / 2e-63 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10036159 [exp] 200 / 2e-63 AT5G09430 308 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 171 / 6e-51 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 167 / 2e-49 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 145 / 2e-40 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10041747 [exp] 138 / 2e-38 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 124 / 4e-33 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097400 [exp] 384 / 3e-134 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 313 / 3e-106 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G094700 [exp] 302 / 6e-102 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G074066 [exp] 300 / 2e-101 AT4G39955 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 191 / 1e-58 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G168600 [exp] 167 / 3e-49 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G024400 [exp] 141 / 2e-39 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 140 / 4e-39 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 140 / 6e-39 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117100 [exp] 137 / 6e-38 AT2G18360 304 / 4e-103 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10020926 pacid=23178000 polypeptide=Lus10020926 locus=Lus10020926.g ID=Lus10020926.BGIv1.0 annot-version=v1.0 ATGGTGATGTGCGGGCTGAGCTTGACAGAGACGAGGAACTGGTGCTACAGCCGGGCATTCTCCTCATCGGGGCTCCGATCCACAATCATCGACCTCAAAG ACGGCACAGTAATCCACTGCTGGGTACCCAATTCCCCGGATCCCAGCAAGCAAAACTTGGTCCTAATCCACGGCTTCGGAGCCAACGCCCTTTGGCAATG GAGCCACGTCGTCCGCCACTTGGCCCCTCACTTCAACATCTACGTTCCGGACCTCGTCTTCTTCGGCCACTCCTTCTCCACCCGACCCGACCGTACCGAG TCCTTCCAGGCCCAGTCTCTCATGCGGGCCCTTATACTACTACTGGACTCATCCTTCTCGAAAAAATTCAGCATCGTTGGACTGAGTTACGGCGGGTTCG TGGGCTACAGCATGGCGGCCCAATTCGAGGACGCGGTGGAGAGAGTGGTGATCTGCTGCTCCGGCGTGTTCATGGAGGAGAAGGATCTGAGAAGTGGGGT TTTCAGGGTGGCTGATTTGGAAGAGGCTGCGGATATTTTGGTGCCCCGCCGGCCGGAGAAGCTCAAGGAGTTGGTGGCTTACACGTTTTACAGGCCCCCG CCGGTTTGGTTGCTTCCTGCTTGGTTGCTGAATGATTTCATCCAATCAATGTGTGGGGAGTACACAGAAGAGAAGAAAGAATTGTTGAGAGCCATTCCGA AAGACAGGAAGATATCTGAAATTCCCAAGATTTCTCAGCAAACTCTGATCATATGGGGAGAGAATGACCAAATTTTTCCTCTGGAACTTGCCTACCGAAT GAAGAGGCATCTGGGAGAGAATACACAGCTTGCAGTGATTAAGAATGCTGGGCATGCTTTCAACGTTGAGAAACCCAAGGAGTTCCTCAAGCTCTTGAAA CTGTTCCTCGTTGATTCCAAGTTCCCTTCAGATACTACTTTGAATCACAATTTAACTTCTTAA
AA sequence Show only first row Show all	>Lus10020926 pacid=23178000 polypeptide=Lus10020926 locus=Lus10020926.g ID=Lus10020926.BGIv1.0 annot-version=v1.0 MVMCGLSLTETRNWCYSRAFSSSGLRSTIIDLKDGTVIHCWVPNSPDPSKQNLVLIHGFGANALWQWSHVVRHLAPHFNIYVPDLVFFGHSFSTRPDRTE SFQAQSLMRALILLLDSSFSKKFSIVGLSYGGFVGYSMAAQFEDAVERVVICCSGVFMEEKDLRSGVFRVADLEEAADILVPRRPEKLKELVAYTFYRPP PVWLLPAWLLNDFIQSMCGEYTEEKKELLRAIPKDRKISEIPKISQQTLIIWGENDQIFPLELAYRMKRHLGENTQLAVIKNAGHAFNVEKPKEFLKLLK LFLVDSKFPSDTTLNHNLTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78210			alpha/beta-Hydrolases superfam...		Lus10020926 [exp]	0	1
AT4G09890			Protein of unknown function (D...		Lus10005802 [exp]	2.8	0.8384
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10003403 [exp]	6.0	0.7777
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	7.1	0.8288
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10037473 [exp]	7.2	0.8253
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Lus10021727 [exp]	18.4	0.8064
AT1G62940		ACOS5	acyl-CoA synthetase 5 (.1)		Lus10025842 [exp]	18.9	0.8275
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10009168 [exp]	19.4	0.7732
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	20.1	0.7540
AT1G26940			Cyclophilin-like peptidyl-prol...		Lus10036733 [exp]	20.2	0.7450
AT1G12230			Aldolase superfamily protein (...		Lus10032243 [exp]	21.2	0.7219

Compare expression of checked genes

Lus10020926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.