Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19090 44 / 1e-05 CRK1, RKF2 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) AT1G70520 41 / 0.0002 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT5G40380 39 / 0.0006 CRK42 cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (.1) AT2G01660 38 / 0.001 PDLP6 plasmodesmata-located protein 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033450 [exp] 245 / 6e-85 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10033389 [exp] 148 / 2e-46 AT1G19090 44 / 2e-05 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10009206 [exp] 117 / 2e-34 ND / Lus10015472 [exp] 63 / 3e-13 AT5G48540 42 / 4e-05 receptor-like protein kinase-related family protein (.1) Lus10022828 [exp] 61 / 4e-12 AT2G01660 43 / 2e-05 plasmodesmata-located protein 6 (.1.2) Lus10028018 [exp] 59 / 2e-11 ND 39 / 5e-04 Lus10012369 [exp] 58 / 2e-11 AT4G11470 42 / 6e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) Lus10011894 [exp] 57 / 7e-11 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1) Lus10028019 [exp] 54 / 1e-09 AT1G70530 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G028100 [exp] 44 / 1e-05 AT4G05200 519 / 8e-177 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024228 [exp] 39 / 0.0005 AT4G23180 551 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024101 [exp] 39 / 0.0006 AT4G23180 531 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.010G065800 [exp] 39 / 0.0008 AT1G04520 337 / 2e-116 plasmodesmata-located protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10020927 pacid=23177992 polypeptide=Lus10020927 locus=Lus10020927.g ID=Lus10020927.BGIv1.0 annot-version=v1.0 ATGAAGAGAAGAGATGGGAGAAGTGGGTTTGGTACTGCAGCTCTAAGCTGGCTGATGCTGATTCTGATGCTGCTATCAGTCCGCCATGTTACATTCTCCT CTGCTGAAGAGGTCACTGTTTGGTACTGCAACAACCAGAAGTTCTCCAAGGACAACCATCCAGAGCTGAGGCACTACGTTCCCACTGTGCTCGAGCAGTT GCATAAAAGCACGCCTGATTATTCGACCAACTCAGCCATCAAGTATCGATTGACGTATCCTCCTGATCAAAGTCCTGGGCTCTATGCTTCTTCGTTTTGC AAGCAGTCTAAGCCTTTAGATTGCGAGTACTGTCTCAGGGCAGCCAAGAGAAAGCTGCTCCATGAATGTGCACAAGCTCTTGGGGGTCAAGTCTATTCCG AACTTTGCTTCATGCGCTTCGAGCTATATGACTTCTTTCAACTATGA
AA sequence Show only first row Show all	>Lus10020927 pacid=23177992 polypeptide=Lus10020927 locus=Lus10020927.g ID=Lus10020927.BGIv1.0 annot-version=v1.0 MKRRDGRSGFGTAALSWLMLILMLLSVRHVTFSSAEEVTVWYCNNQKFSKDNHPELRHYVPTVLEQLHKSTPDYSTNSAIKYRLTYPPDQSPGLYASSFC KQSKPLDCEYCLRAAKRKLLHECAQALGGQVYSELCFMRFELYDFFQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Lus10020927 [exp]	0	1
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011557 [exp]	8.7	0.7782
AT3G14280			unknown protein		Lus10037453 [exp]	10.7	0.7841
AT3G47160			RING/U-box superfamily protein...		Lus10006447 [exp]	11.8	0.7911
AT2G19460			Protein of unknown function (D...		Lus10006019 [exp]	14.0	0.7593
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	17.5	0.7643
AT3G24535			unknown protein		Lus10023639 [exp]	21.1	0.7626
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	21.3	0.7745
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10007334 [exp]	23.0	0.7522
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10027924 [exp]	25.0	0.7488
AT5G43180			Protein of unknown function, D...		Lus10025217 [exp]	26.1	0.7309

Compare expression of checked genes

Lus10020927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.