Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34780 258 / 8e-85 ATAPRL4 APR-like 4 (.1.2) AT4G08930 224 / 9e-72 ATAPRL6 APR-like 6 (.1) AT3G03860 119 / 2e-31 ATAPRL5 APR-like 5 (.1) AT5G18120 112 / 7e-29 ATAPRL7 APR-like 7 (.1) AT3G54960 51 / 7e-07 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT2G47470 50 / 1e-06 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT2G32920 47 / 2e-05 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G04980 41 / 0.0007 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT5G60640 41 / 0.0009 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033449 [exp] 584 / 0 AT1G34780 260 / 8e-86 APR-like 4 (.1.2) Lus10036486 [exp] 375 / 9e-131 AT1G34780 272 / 2e-90 APR-like 4 (.1.2) Lus10010354 [exp] 370 / 3e-129 AT1G34780 268 / 2e-89 APR-like 4 (.1.2) Lus10005703 [exp] 134 / 1e-36 AT3G03860 310 / 7e-106 APR-like 5 (.1) Lus10020283 [exp] 121 / 4e-32 AT3G03860 296 / 3e-100 APR-like 5 (.1) Lus10010274 [exp] 49 / 3e-06 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10036337 [exp] 48 / 5e-06 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10020691 [exp] 46 / 2e-05 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10015160 [exp] 45 / 7e-05 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G164200 [exp] 306 / 9e-104 AT1G34780 364 / 1e-126 APR-like 4 (.1.2) Potri.002G097601 [exp] 306 / 2e-103 AT1G34780 357 / 9e-124 APR-like 4 (.1.2) Potri.013G057100 [exp] 119 / 2e-31 AT5G18120 293 / 3e-99 APR-like 7 (.1) Potri.019G035700 [exp] 115 / 1e-29 AT5G18120 277 / 4e-93 APR-like 7 (.1) Potri.014G122800 [exp] 47 / 6e-06 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 47 / 8e-06 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.008G040100 [exp] 44 / 7e-05 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.002G082100 [exp] 42 / 0.0006 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10020928 pacid=23177987 polypeptide=Lus10020928 locus=Lus10020928.g ID=Lus10020928.BGIv1.0 annot-version=v1.0 ATGGGGTCTACGATTAGGGTTTCGAAGAGGAGGACATGGGAGTTGGTTGTTGTGGTGGTGGTATTGGCACTCACTCTTTCTGGCACCTCCGCTGCTTCTA AGGATCTGATGTGCCCTAGGCTCTCTATCACCGATTCCATCTTTGGGGTCGGAGAATTGAAACCCGGTTTTCACTCTGCTAATTCTCTGTCTTCCGCCTG CGTCAAAGAGGGAGGCGAAGCTGCATTATGGAAAGCACTGGATTTGGTTTACAGTGGTAGTTTGGAGAATGTAGCTGTGCTATTTTATGCAGCATGGTGC CCTTTTTCGACGGCATTAAAACTGGAATTCCCTATCTTGGCTTCCCTGTATCCATCTATCCCCCATATAGCTGTTGAAGAATCAGCCATCCGGCCCAGCA CGCTTTCCAAGTATGGAGTTCATGGCTTTCCCACTCTTCTGCTTCTGAATTCTACAATGCGTGTACGCTACCATGGTTCCCGGACATTTAGCTCTCTGGT TACCTTCTACAATGATGCAACTGGTGTGTTACCTGATAATGCGTCATTTTCGAAGATATGGTACCCTTTGACCCTTGGAAAGCATGACATTATTGACCCA GAAAGCTGCCCGTTTTCCTGGGCTAGGTCTCCAGAGAAATTGCTGATGCAAGAAACGTATCTGGCTCTTGCCTCAGCCTTTCTGGTTTTTAGATTCCTCT ACTTAATGTTACCGAGTCTGGTTGTATTTGCGCAACTAGTTTGGAGGAGGCAGGTGAGTCGTGCAAGGATCAGGAGCATCCTGGGTCAGCCGCGAGTCTT TATGACCGATGTTGTCCAGGCATTCAAGTGCCTTTTGAAACCTTGCAAGAAAGGTAATTTACAGGAAGGGGCAATGAATGCCGGAGCATGGGCTTCGAAG TCGCTCGTCACAGTAGCTAGAGCGGGAGAAGCAAGCACGAGTGGCACGGCACAGAAATCGTGA
AA sequence Show only first row Show all	>Lus10020928 pacid=23177987 polypeptide=Lus10020928 locus=Lus10020928.g ID=Lus10020928.BGIv1.0 annot-version=v1.0 MGSTIRVSKRRTWELVVVVVVLALTLSGTSAASKDLMCPRLSITDSIFGVGELKPGFHSANSLSSACVKEGGEAALWKALDLVYSGSLENVAVLFYAAWC PFSTALKLEFPILASLYPSIPHIAVEESAIRPSTLSKYGVHGFPTLLLLNSTMRVRYHGSRTFSSLVTFYNDATGVLPDNASFSKIWYPLTLGKHDIIDP ESCPFSWARSPEKLLMQETYLALASAFLVFRFLYLMLPSLVVFAQLVWRRQVSRARIRSILGQPRVFMTDVVQAFKCLLKPCKKGNLQEGAMNAGAWASK SLVTVARAGEASTSGTAQKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10020928 [exp]	0	1
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10012781 [exp]	1.4	0.8287
AT4G14220		RHF1A	RING-H2 group F1A (.1)		Lus10034049 [exp]	2.0	0.7958
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10008288 [exp]	4.2	0.8225
AT3G58670			Protein of unknown function (D...		Lus10020711 [exp]	7.5	0.7572
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	9.3	0.8206
AT3G03940			Protein kinase family protein ...		Lus10024261 [exp]	9.9	0.7868
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10005868 [exp]	10.2	0.7534
AT4G39140			RING/U-box superfamily protein...		Lus10017978 [exp]	12.0	0.7936
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10036915 [exp]	14.2	0.7372
AT3G49590		ATG13	autophagy-related 13, Autophag...		Lus10034457 [exp]	14.7	0.7396

Compare expression of checked genes

Lus10020928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.