Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08920 902 / 0 OOP2, HY4, BLU1, CRY1, ATCRY1 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) AT1G04400 630 / 0 FHA, AT-PHH1, CRY2, ATCRY2 cryptochrome 2 (.1.2) AT3G15620 162 / 5e-43 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT5G24850 102 / 1e-22 CRY3 cryptochrome 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033446 [exp] 1068 / 0 AT4G08920 1009 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10011822 [exp] 647 / 0 AT1G04400 781 / 0.0 cryptochrome 2 (.1.2) Lus10021188 [exp] 630 / 0 AT1G04400 747 / 0.0 cryptochrome 2 (.1.2) Lus10022095 [exp] 145 / 6e-37 AT3G15620 725 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10020878 [exp] 103 / 6e-23 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10033499 [exp] 97 / 1e-21 AT5G24850 440 / 4e-153 cryptochrome 3 (.1) Lus10000521 [exp] 57 / 1e-08 AT3G15620 295 / 7e-98 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10007880 [exp] 45 / 0.0001 AT2G47590 521 / 0.0 photolyase/blue-light receptor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G096900 [exp] 971 / 0 AT4G08920 1017 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.005G164700 [exp] 959 / 0 AT4G08920 999 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.010G071200 [exp] 673 / 0 AT1G04400 799 / 0.0 cryptochrome 2 (.1.2) Potri.008G166632 [exp] 218 / 1e-67 AT1G04400 249 / 5e-80 cryptochrome 2 (.1.2) Potri.003G060000 [exp] 168 / 3e-45 AT3G15620 908 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Potri.006G277500 [exp] 102 / 1e-22 AT5G24850 781 / 0.0 cryptochrome 3 (.1) Potri.014G128500 [exp] 49 / 5e-06 AT2G47590 540 / 0.0 photolyase/blue-light receptor 2 (.1) Potri.002G204000 [exp] 49 / 8e-06 AT2G47590 530 / 0.0 photolyase/blue-light receptor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03441 [flax] [poplar] FAD_binding_7 FAD binding domain of DNA photolyase CL0039 [flax] [poplar] HUP PF00875 [flax] [poplar] DNA_photolyase DNA photolyase
Representative CDS sequence Show only first row Show all	>Lus10020930 pacid=23178010 polypeptide=Lus10020930 locus=Lus10020930.g ID=Lus10020930.BGIv1.0 annot-version=v1.0 ATGTCTGGTGGCGGCGGAGGGGGAGGCGGAGGCGGATGCAGCTGCGTCGTATGGCTGCGAAGAGATCTAAGAGTAGAAGATAACCCTGCGCTGGCTGCTG GAGTGAGAGCTGGGACGGTGGTGCCGTTATTCATATGGGCGCCTGAAGAAGAAGGCCATTACTACCCTGGAAGAGTATCCAGGTGGTGGCTGAAGCACAG CTTAGCTCATCTCGATTCTTCACTCCGTAGCCTTGGCGCTCCTTTACTCACCAAGAGATCTACCGACTCTCTCTCCACTCTCCTTCAAGTTCTTGAATCC ATTGGCGCCACTCACCTCTTCTTCAACCACTTATATGATCCATTGTCGCTGGTTAGGGATCACAGAGCGAAGGAGGTTTTGACTGCTAGGGGAATAGTTG TGAGATCTTTTAATGCTGATCTTCTATATGAACCATGGGATGTTAGCGATGATCAAGGACGTCCTTTCTCAACCTTTGCTTCCTTCTGGGATAGATGCCT TAACATGCCTTATGATCCTGAATCTCCACTTCTCCCACCCAAGAGGATCATAGCAGGTGATGTATCGAGATGTCCATCGGACACGCTGGTATTCGAAGAT GAATCGGAGAAGGCAAGCAATGCACTTCTTGCTAGAGCATGGTCTCCCGGGTGGAGTAATGCTGATAAGGCCTTGACCACTTTTATCAATGGGCCTTTGC TTGAGTACTCGAATAATCGGAGGAAGGCTGACAGTGCTACAACTTCGTTTCTGTCCCCGCACTTGCATTTTGGGGAGGTTAGTGTCAGGAAAGTGTTTCA TCTTGTCCGAATCAAGCAGGTTCAGTGGGCCAACGAAGGGAACATCCCTGGTGAAGAGAGTGTCAATTTGTTTCTCAAGTCCATCGGTCTTAGAGAATAC TCTAGGTACATGAGCTTCAATCATCCATACAGTCACGAGAAGCCTCTCCTAGGACATCTCAAGTTCTTTCCTTGGGTTGTTGATGAAGGCTATTTCAAGG CGTGGAGGCAAGGGAGGACTGGTTATCCATTAGTTGATGCCGGGATGAGAGAATTGTGGGCCACTGGATGGATGCATGACCGGATTCGAGTTGTGGTTTC GAGCTTTTTTGTCAAGGTTCTGCAACTTCCTTGGAGATGGGGCATGAAGTATTTTTGGGATACACTCTTGGATGCCGATTTGGAGAGCGATGCTCTTGGT TGGCAATACATTTCCGGAACTATCCCTGATGGTCGTCAGTTCGACCGCATCGATAATCCACAGTTCCCGTTTCTCAATAAAGTTTCTGGGCTTCTGCAGT TTGAGGGATACAAATTTGATCCTAACGGGGAATATGTTCGTCGCTGGCTACCTGAACTTGCTAGACTTCCAACTGAGTGGATACATCACCCATGGAATGC ACCTGAATCGGTTCTCCAAGCTGCCGGTATCGAACTGGGATCCAACTACCCTCTCCCCATTGTAGGGATAGATGCAGCAAAAGTGAGGTTGGAAGACGCA CTTGCAGAAATGTGGCAACAGGAAGCTGCTTCAAGAGCAGCCATTGAGAATGGGACTGAAGAAGGCCTCGGGGATTCCTACGACTTCGAACCAATAGCCT TCCCTCAGGATATACAAATGGAGGAGCCGCACGAACATGTGAACGCAAACTGGATGGTGCCATGGTGGAAGAACGTGGCAATTATATGGTTTAACCCATC CACCAACCACTGTGCTGATAAAATCGAAGGGTCCACCCAAGTAAATCATTAG
AA sequence Show only first row Show all	>Lus10020930 pacid=23178010 polypeptide=Lus10020930 locus=Lus10020930.g ID=Lus10020930.BGIv1.0 annot-version=v1.0 MSGGGGGGGGGGCSCVVWLRRDLRVEDNPALAAGVRAGTVVPLFIWAPEEEGHYYPGRVSRWWLKHSLAHLDSSLRSLGAPLLTKRSTDSLSTLLQVLES IGATHLFFNHLYDPLSLVRDHRAKEVLTARGIVVRSFNADLLYEPWDVSDDQGRPFSTFASFWDRCLNMPYDPESPLLPPKRIIAGDVSRCPSDTLVFED ESEKASNALLARAWSPGWSNADKALTTFINGPLLEYSNNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVQWANEGNIPGEESVNLFLKSIGLREY SRYMSFNHPYSHEKPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALG WQYISGTIPDGRQFDRIDNPQFPFLNKVSGLLQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEDA LAEMWQQEAASRAAIENGTEEGLGDSYDFEPIAFPQDIQMEEPHEHVNANWMVPWWKNVAIIWFNPSTNHCADKIEGSTQVNH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10020930 [exp]	0	1
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10041820 [exp]	1.0	0.8839
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10033446 [exp]	1.4	0.8826
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Lus10033977 [exp]	2.8	0.8509
AT5G48970			Mitochondrial substrate carrie...		Lus10006521 [exp]	3.2	0.8321
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	4.2	0.8569
					Lus10025480 [exp]	6.3	0.7800
AT4G16580			Protein phosphatase 2C family ...		Lus10010797 [exp]	6.5	0.8286
AT5G66050			Wound-responsive family protei...		Lus10028398 [exp]	8.9	0.8169
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10038819 [exp]	9.4	0.8250
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10019899 [exp]	10.1	0.8294

Compare expression of checked genes

Lus10020930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.