Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22310 56 / 6e-09 ATMBD8, MBD8 methyl-CPG-binding domain 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033445 [exp] 246 / 5e-82 AT1G22310 79 / 9e-17 methyl-CPG-binding domain 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097700 [exp] 89 / 6e-20 AT1G22310 105 / 2e-23 methyl-CPG-binding domain 8 (.1.2) Potri.005G164100 [exp] 84 / 4e-18 AT1G22310 100 / 6e-22 methyl-CPG-binding domain 8 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020931 pacid=23177946 polypeptide=Lus10020931 locus=Lus10020931.g ID=Lus10020931.BGIv1.0 annot-version=v1.0 ATGGCCGCCTTCTCATCCGCCGTCAACACTTCCTCTTCCCAAGTCTCCGGCGACCAACACCCGACTCACAACAACCTCGACGCCGAATCCCTTCCTCTCA TTGACCTCCGACTTCTCTCTCAATCCGAACTACTCTCCCTCTCCCTCTGCTCCTCTACATTCTCCGCCGTCCACTCTCTCCACAGCGACACCGATCTTTC CACTCCAAGAATCGATCGCTCCGTCTTCAACGAATCTTCCGGAAGCCGTAAACAGACCTTCTCCCGCCTCCGCCTCGCCCCTCGTGGCAGCTCGCACTTG CCGTCCGCTTCGGCTTCTATTGCGACTCCCTTACATCGTCAGATCCCGGAGGAGAGCCTTCAGATCGTAACGAGACTCAAGTCGCTCTTCGGCATCGTCG ATTCTGGTTGCGGTCAGAAGAATGGTGGCGAGGATGACCTAGTTTCTGTCCCAATCCAGTTCGACGAAACTATTTCCTTTCTTTCGAATAAGGCACGGGC GCTACCGACTGCGCGTATGGAGACCGCTAATTCTAGTTGTAGCCGAGACGTTGAGCAGCCGGTGGTGCTATTGGCTGGATCTGGAAATTCCGGAGGTACT AAGCGGAAGCGAGGTAGGCCAAGGAAAACTCAGCCTAATGTCCTGATGCCTAATGGTAATGGAGTCTCTGAAGCGGTTGAGTTAGCAGCTGCTTTCCCAA AAGTGGATGATCCGAATGGGGATGGGATAAGGAACAGCACCGAAGTCACATAA
AA sequence Show only first row Show all	>Lus10020931 pacid=23177946 polypeptide=Lus10020931 locus=Lus10020931.g ID=Lus10020931.BGIv1.0 annot-version=v1.0 MAAFSSAVNTSSSQVSGDQHPTHNNLDAESLPLIDLRLLSQSELLSLSLCSSTFSAVHSLHSDTDLSTPRIDRSVFNESSGSRKQTFSRLRLAPRGSSHL PSASASIATPLHRQIPEESLQIVTRLKSLFGIVDSGCGQKNGGEDDLVSVPIQFDETISFLSNKARALPTARMETANSSCSRDVEQPVVLLAGSGNSGGT KRKRGRPRKTQPNVLMPNGNGVSEAVELAAAFPKVDDPNGDGIRNSTEVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10020931 [exp]	0	1
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10013818 [exp]	7.1	0.7642
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10039108 [exp]	8.8	0.7395
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10028520 [exp]	9.8	0.7012
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10040157 [exp]	11.4	0.7001
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10015741 [exp]	13.2	0.7610
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10004772 [exp]	15.1	0.7233
AT3G15095		HCF243	high chlorophyll fluorescence ...		Lus10013679 [exp]	15.3	0.6833
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10031547 [exp]	21.0	0.6610
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10033590 [exp]	25.8	0.7122
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10037330 [exp]	29.4	0.7181

Compare expression of checked genes

Lus10020931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.