Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34580 624 / 0 Major facilitator superfamily protein (.1) AT4G21480 509 / 5e-178 STP12 sugar transporter protein 12 (.1) AT1G11260 500 / 5e-174 ATSTP1, STP1 sugar transporter 1 (.1) AT3G19940 493 / 2e-171 Major facilitator superfamily protein (.1) AT1G50310 481 / 2e-166 ATSTP9 sugar transporter 9 (.1) AT5G26340 481 / 3e-166 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT5G23270 477 / 3e-165 ATSTP11, STP11 sugar transporter 11 (.1) AT3G19930 474 / 8e-164 ATSTP4, STP4 sugar transporter 4 (.1) AT4G02050 471 / 7e-163 STP7 sugar transporter protein 7 (.1) AT5G61520 459 / 4e-158 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018422 [exp] 506 / 1e-176 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10013441 [exp] 500 / 6e-174 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10002597 [exp] 484 / 2e-168 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10010534 [exp] 478 / 4e-165 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 478 / 5e-165 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 478 / 6e-165 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10009656 [exp] 471 / 2e-162 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2) Lus10036325 [exp] 450 / 2e-154 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10040991 [exp] 449 / 5e-154 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G095900 [exp] 705 / 0 AT1G34580 672 / 0.0 Major facilitator superfamily protein (.1) Potri.002G096000 [exp] 615 / 0 AT1G34580 594 / 0.0 Major facilitator superfamily protein (.1) Potri.004G233500 [exp] 497 / 4e-173 AT5G61520 574 / 0.0 Major facilitator superfamily protein (.1.2) Potri.005G090700 [exp] 481 / 1e-166 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.016G120700 [exp] 478 / 2e-165 AT5G61520 570 / 0.0 Major facilitator superfamily protein (.1.2) Potri.007G073850 [exp] 477 / 3e-165 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 477 / 3e-165 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.004G033600 [exp] 477 / 5e-165 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.011G042100 [exp] 476 / 2e-164 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.007G072800 [exp] 474 / 3e-164 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10020934 pacid=23177986 polypeptide=Lus10020934 locus=Lus10020934.g ID=Lus10020934.BGIv1.0 annot-version=v1.0 ATGGCACCGGCGGTGGGGGTTTTAGCAGTAAACGGAGGGGCGATTAAGGACTTCGGCGGCAAGATAACGGCGTCCGTTGTAGTCACTTGCATCGTTGCTG CGTCCAGTGGCCTTATCTTTGGATATGACATTGGTATTTCAGGTGGAGTAACGACAATGGAACCATTCTTGAAGAAGTTCTTCCCGTCGGTTCTGAAGAA AGCAGGGTCAACGCAGACCAACATCTATTGTCAGTACGACAGTCAACTATTGACGGCATTCACCTCGTCGCTTTACATTGCAGGATTGGCCGCATCCTTG GTGGCCAGCCGAGTCACCGCAGCACTCGGACGCAAGAACATAATGGTGGTCGGTGGCCTCACCTTCCTTGCCGGCGGTGCCATCAACGGCGGCGCTATCA CCGTCTCCATGCTTATCCTTGGTCGCATCTTGCTTGGCCTTGGAGTTGGGTTCACTAACCAAGCAGCCCCACTGTACCTGTCAGAGGTAGCGCCGGCAAA ATGGAGAGGAGCATTCAACGCAGGCTTCCAGTTCTTCATAGGAATCGGCGTCGTCGCATCCAACTGCATCAACTTCTTCCTGGCCGATCTCGAATGGGGC TGGCGACTCTCTCTCGGCCTCGCTGTCGTTCCGGCAACCATCATGACCGTCGGAGTCCTCCTCATCACCGACACGCCCAGCAGCCTCGTGGAGCGCGGCA AGCTCCGAGAGGCCAAACAGTCTCTGGTCAAAATACGAGGGCCCGGCGCTGACGTGGACGGCGAGCTGGATGACCTGGTGAAATGGGTCGACGTGGCCAA AGCGGCCAATCAGGAGCCGTTCGCGACGATATTCAAGAGGCAGTACCGGCCCCACCTGGTGATCGCCGTCGCTATAGCGTTCTTTCAGCAGGTTACCGGG ATCAATATTATTGCGTTCTACGCGCCGGTATTGTTTAGGTCCGTTGGGTTTGGGAAAGACTCGTCTTTGATTGCGTCGATCATTCTGGGGATTGTGAATT TGGGGGCTATACTTGTCTCCACCGGCGTGGTTGATCGGTACGGGCGGAGGTTCTTGTTTATTGTCGGCGGCTTCCAGATGCTTATTTCTAAGGTAGCGGT GGCGGTGGTGCTTGTAGTCGGGACGGGAGCTTCAGGGACGGAGCACATAAGCAAGGGGCTGGCGATCGGCGTGCTGATTTTGCTGTGCACTTACGGTGCC GGATTTGGTTGGTCGTGGGGCCCACTGAGTTGGCTGATTCCGAGTGAAATTTTCCCGATCAAGATCCGGACAACTGGACAAAGCATAAGTCTGGCGATCA ATTTCGCAACTACTTTTGTACTGTCGCAGACATTCCTGACGATGTTGTGCCATTTCAAGTACGGAGCATTCCTATTTTACGCCGGCTGGGTAACCGTCAT GACGATGTTCATCGTCTTTTTCCTGCCGGAGACCAAAGGGATTCCGCTCGACTCCATGCAGTCCGTCTGGGAGCAGCATTGGTACTGGCGTCGATTTGTT AGGGCCACATGA
AA sequence Show only first row Show all	>Lus10020934 pacid=23177986 polypeptide=Lus10020934 locus=Lus10020934.g ID=Lus10020934.BGIv1.0 annot-version=v1.0 MAPAVGVLAVNGGAIKDFGGKITASVVVTCIVAASSGLIFGYDIGISGGVTTMEPFLKKFFPSVLKKAGSTQTNIYCQYDSQLLTAFTSSLYIAGLAASL VASRVTAALGRKNIMVVGGLTFLAGGAINGGAITVSMLILGRILLGLGVGFTNQAAPLYLSEVAPAKWRGAFNAGFQFFIGIGVVASNCINFFLADLEWG WRLSLGLAVVPATIMTVGVLLITDTPSSLVERGKLREAKQSLVKIRGPGADVDGELDDLVKWVDVAKAANQEPFATIFKRQYRPHLVIAVAIAFFQQVTG INIIAFYAPVLFRSVGFGKDSSLIASIILGIVNLGAILVSTGVVDRYGRRFLFIVGGFQMLISKVAVAVVLVVGTGASGTEHISKGLAIGVLILLCTYGA GFGWSWGPLSWLIPSEIFPIKIRTTGQSISLAINFATTFVLSQTFLTMLCHFKYGAFLFYAGWVTVMTMFIVFFLPETKGIPLDSMQSVWEQHWYWRRFV RAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34580			Major facilitator superfamily ...		Lus10020934 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10035423 [exp]	8.8	0.6933
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10037859 [exp]	11.1	0.7740
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10035502 [exp]	11.2	0.6975
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10021863 [exp]	17.4	0.6514
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10009617 [exp]	17.9	0.7430
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10021400 [exp]	23.9	0.5934
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10025104 [exp]	24.8	0.7306
					Lus10030775 [exp]	26.8	0.7067
AT1G29010			unknown protein		Lus10013977 [exp]	27.6	0.7267
					Lus10034328 [exp]	41.8	0.6847

Compare expression of checked genes

Lus10020934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.