Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 939 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 819 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 570 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 560 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 546 / 1e-176 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G44700 535 / 2e-171 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G48940 527 / 2e-169 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 525 / 3e-167 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G24240 511 / 2e-163 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G26540 498 / 1e-158 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008712 [exp] 1756 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 1433 / 0 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 833 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 816 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 736 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 715 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 681 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10031161 [exp] 621 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10005017 [exp] 519 / 1e-170 AT4G08850 562 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G123800 [exp] 810 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129100 [exp] 782 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G122500 [exp] 779 / 0 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 774 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 774 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.012G124200 [exp] 771 / 0 AT4G08850 743 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123400 [exp] 761 / 0 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 750 / 0 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 748 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G060400 [exp] 747 / 0 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020935 pacid=23177913 polypeptide=Lus10020935 locus=Lus10020935.g ID=Lus10020935.BGIv1.0 annot-version=v1.0 ATGGCAACTCCAATCTTGAACAAGCTTCCAACTTTCTCCTTCTTCCTCACAATTCTCCTCACTTCTCCACTCCCCACATTGTCCGACTCAGCATCGGAAG CAGCAGCGCTCCAGAAATGGGCATCCACACTTCACAGCCCCCGCCAGTCCAACATCTCCACCTGGCCAACCTCCGCCGCCACCACCCCCTGTGGCTGGAT TGGAATATCCTGCTCCCGCGGCGGAAGCGTCCTCCGATTAAACCTAACAAGCTCCAACCTAAACGGTACGCTTCAAGACTTCCCCTTTTCCTCCCTCCCT AACCTCTCCTACTTCGAGCTCAGCGTCAACTACCTCTACGGCGTCATCCCGCCCCAAATCGGCCTCCTCACCAACCTAATCTACCTCGATTTGTCTCTCA ACATGTTCACCGGCTCAATCCCGCCGGAGATCGGACTCCTCACCAAGCTCGACACTCTCCACCTCATCCAGCTCCAACTCAACGGCTCGATTCCCGACGA CATCGGGAATTTGAAATCCCTAACCGAGCTCGCCCTCTACACAAACTTCCTCGACGGCCCGATTCCTTCTTCAATTGGAAACTTGACGAAATTAGAACGC TTGTATCTCTACGACAACCAGCTCTCCGGTCAAATCCCTGCAGAGATCGGTAACCTCGTTAATTTGACTGAAGCTTTCCTCGACACGAATCAGTTTTCTG GTTCAATCCCTAAAAGTATCGGGAAGCTGAAAAACTTGAACACGCTTTACATGTTCTTGAATCATCTCTCTGGCTCTCTCCCTGATGAAATTGGGAACTT AACCTCGCTGCAGTACCTTAGCCTCCATAGCAATAACTTTACTGGAACCATTCCTCCATCTATGGGAAGGTTGACTTCGATTGTTCAGTTTCATCTCTAC AACAACCAGCTCTCCGGCAGGATTCCACCCGAGCTGGGGAACATGAACTTCGTTGAGGATTTGGAGCTGAGTGAGAATCGGCTCACTGGTCCTGTTCCTT CCTCCATTGGAAATTTAAGCTCTTTGGAGATTCTGTTTCTTCGTGTCAACCGTCTCTCTGGCTATTTACCTGATGATATGTCGAAACTGACCAATCTGAA GGTTTTGCAGCTGGACAGTAACAGGTTTACCGGTTTTCTCCCTGAGAACATCTGTGGGAGTCAAAGTCTGATAAACTTTACTGCCTATGATAACAACTTC ACCGGTCCGGTTCCTAGATGCTTCAAGAACTGCACAACCTTTGTCCGGGTTCGCCTGGAAAACAACCAGTTCACTGGAAATGTTTCAGAGGATTTCGGTG TGTACCCGGATTTGCAGTTCATGGATCTCAGCAGGCATAACTTCTCTGGTGATGTATCGCCCAATTGGGGATCCTGTCCGAATTTGGCTACATTGCGGAT TTCGGGTAACAATATCAGCGGTGTTATCCCTCCAGAGATTGGTAATATTTCTCAGCTACAAGCGCTTGATCTTTCTTCTAATCAGTTAGTTGGTCAGATC CCGAAACAGCTTGGTAATTTGACTTCCTTGGCGAGGCTGATACTCAATGGCAATCAACTCTATGGCGCTATCCCTTCAGAGTTCAATTCATTTACCGAAA TGGAAGTGCTGGACCTGTCTTCAAATCGACTCAACCAGTCGCTTCCAACGAGTTTGGGAAATTTCGCGCAGCTAAACTACTTGAATTTGAGCAACAATGA GTTTAGCCAGATAATTCCTGACCAGTTGGGAAATCTGGTTCATTTGACAACTCTTGATCTGAGCCGGAACTCGCTCAGCGGGTCGATTCCGGCAAGACTG AGTTCCTTATCCAGCTTGGAGCTCCTGAACATATCAAGAAACGATCTTTCTGGTTCTATCCCAAAAGGGTTTGAAAAAATCCCTTTACAGACGGTGGACA TATCCCATAACAAACTGCAGGGTGCTCTACCAAGCAGCAAGGCCTTCCAAAATGCTTCAATTGAAGAAGTAGTGGGGAATAGCGGCTTGTGTGGGAACAT AGAAAGTTTAGAGCCTTGTCCTTCCACAACAACAGAGAAAGGTTCATCAAAGAGGAGCCGCACATTTTGGTTCTTGGTAATTTTCCTACCTGTTTTAGCA GCACTGATACTGGTATTGGCAATGTTCTGCGTATGCCGAAAAGGCAGAATAGATGCGGAAGCTGAACTGCTACAGCAGCAGGAAGAGGATATCTTATTAA CGCCTGGATTCGATGGGAAGATAATGTACTCGGAGATCGTGAAAGCAACTGAAAAATTCGACTCCAAGTATTGCGTGGGGAAAGGAGGGTACGGCAGCGT ATACAAAGCAATGCTGCCATCTGGGATCACCGTGGCAGTGAAAAAGGTCCATCCTTTTCATGATAGTGAGGGGGTTTCTCAGGAGGAGTTCTTGAGAGAA ATCAAAGCCCTGACCGAGATAAGGCATAGCAACATTGTCAAACTATATGGATTCTGCTCCCATTCGCGGGACTCTTTCTTGGTTTACGAGTACCTCGAGA GAGGAAGTCTGGCGTCGATCTTGAGGGACGAGCAAGAAGCTAGAGAGTTGGATTGGGAGAAGAGGGTGAATATTGTGAGAGGTGTGGCTCATGCTTTGTC TTACTTGCACCACGACTGCTCCATCCCGATCGTCCACAGAGACATTACAAGCAACAATGTGTTGTTGGATTCCGATTACGAAGTTCGAGTGTCGGATTTT GGGACGGCCAAACTTCTCAACCATGATACCTCCCACTGGACTGCACAAGCCGGCACTCGTGGCTACATTGCTCCAGAGCTGGCGTACACGATGAAAGTAA CGGAGAAATGCGATGTGTACAGCTTCGGGGTGTTGGCGCTGGAAGTGATCAGAGGGGATCATCCTGGGGAAATTGTGCTGTCATTGGCTTCTTCTACTGC GGCAGACAATGTGTTGCCACTTGATGATCTGATAGACCAGCGCCTCGCGCCTCCTTCGACGTTAATTCGCGAAGAACTGGAAACGTTGTTGAGGATTGCA GCAATATGTTTGAGCGCTGATCCGCAGTTTAGGCCGGAGATGAGATTGGCTTCGCAGATGTTGTCAAAGGACCAAATGAGCGTTCCTAATTACGAGAAAA AATAG
AA sequence Show only first row Show all	>Lus10020935 pacid=23177913 polypeptide=Lus10020935 locus=Lus10020935.g ID=Lus10020935.BGIv1.0 annot-version=v1.0 MATPILNKLPTFSFFLTILLTSPLPTLSDSASEAAALQKWASTLHSPRQSNISTWPTSAATTPCGWIGISCSRGGSVLRLNLTSSNLNGTLQDFPFSSLP NLSYFELSVNYLYGVIPPQIGLLTNLIYLDLSLNMFTGSIPPEIGLLTKLDTLHLIQLQLNGSIPDDIGNLKSLTELALYTNFLDGPIPSSIGNLTKLER LYLYDNQLSGQIPAEIGNLVNLTEAFLDTNQFSGSIPKSIGKLKNLNTLYMFLNHLSGSLPDEIGNLTSLQYLSLHSNNFTGTIPPSMGRLTSIVQFHLY NNQLSGRIPPELGNMNFVEDLELSENRLTGPVPSSIGNLSSLEILFLRVNRLSGYLPDDMSKLTNLKVLQLDSNRFTGFLPENICGSQSLINFTAYDNNF TGPVPRCFKNCTTFVRVRLENNQFTGNVSEDFGVYPDLQFMDLSRHNFSGDVSPNWGSCPNLATLRISGNNISGVIPPEIGNISQLQALDLSSNQLVGQI PKQLGNLTSLARLILNGNQLYGAIPSEFNSFTEMEVLDLSSNRLNQSLPTSLGNFAQLNYLNLSNNEFSQIIPDQLGNLVHLTTLDLSRNSLSGSIPARL SSLSSLELLNISRNDLSGSIPKGFEKIPLQTVDISHNKLQGALPSSKAFQNASIEEVVGNSGLCGNIESLEPCPSTTTEKGSSKRSRTFWFLVIFLPVLA ALILVLAMFCVCRKGRIDAEAELLQQQEEDILLTPGFDGKIMYSEIVKATEKFDSKYCVGKGGYGSVYKAMLPSGITVAVKKVHPFHDSEGVSQEEFLRE IKALTEIRHSNIVKLYGFCSHSRDSFLVYEYLERGSLASILRDEQEARELDWEKRVNIVRGVAHALSYLHHDCSIPIVHRDITSNNVLLDSDYEVRVSDF GTAKLLNHDTSHWTAQAGTRGYIAPELAYTMKVTEKCDVYSFGVLALEVIRGDHPGEIVLSLASSTAADNVLPLDDLIDQRLAPPSTLIREELETLLRIA AICLSADPQFRPEMRLASQMLSKDQMSVPNYEKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020935 [exp]	0	1
AT4G21700			Protein of unknown function (D...		Lus10030937 [exp]	1.0	0.8791
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Lus10002742 [exp]	2.4	0.8486
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	3.7	0.8711
AT3G22060			Receptor-like protein kinase-r...		Lus10027145 [exp]	7.3	0.8149
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020936 [exp]	17.7	0.7617
AT2G15220			Plant basic secretory protein ...		Lus10019806 [exp]	19.3	0.8425
AT5G25930			Protein kinase family protein ...		Lus10005491 [exp]	21.0	0.7629
					Lus10005523 [exp]	35.0	0.7682
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022193 [exp]	36.4	0.7866
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006302 [exp]	39.8	0.7290

Compare expression of checked genes

Lus10020935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.