Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 747 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 671 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 468 / 2e-150 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 453 / 1e-144 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 441 / 8e-139 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 441 / 1e-138 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 429 / 2e-135 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 404 / 5e-126 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 396 / 4e-124 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 392 / 1e-121 Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020935 [exp] 1433 / 0 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 1405 / 0 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 650 / 0 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019035 [exp] 631 / 0 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10003612 [exp] 598 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10002293 [exp] 590 / 0 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10004046 [exp] 573 / 0 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 572 / 0 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10028612 [exp] 423 / 2e-133 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G261900 [exp] 672 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G099200 [exp] 671 / 0 AT4G08850 654 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 668 / 0 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129300 [exp] 665 / 0 AT4G08850 687 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.019G129100 [exp] 663 / 0 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 662 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 662 / 0 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.015G124400 [exp] 661 / 0 AT4G08850 644 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123800 [exp] 661 / 0 AT4G08850 751 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 661 / 0 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10020936 pacid=23177995 polypeptide=Lus10020936 locus=Lus10020936.g ID=Lus10020936.BGIv1.0 annot-version=v1.0 ATGTTCTTGAATCATCTCTCTGGCTCTCTCCCTGATGAAATTGGGAACTTAACCTCGCTGCAGTACCTTAGCCTCCATAGCAATAACTTTACTGGAACCA TTCCTCCATCTATGGGAAGGTTGACTTCGATTGTTCAGTTTCATCTCTACAACAACCAGCTCTCCGGCAGGATTCCACCGGAGGTGGGGGACTTGAACTT CGTTGAGGATTTGGAGCTGAGTGAGAATCGGCTCACTGGTCCTGTTCCTTCCTCCATTGGAAATTTAAGCTCTTTGGAGATTCTGTTTCTTCGTGTCAAC CGTCTCTCTGGTTTCTTACCTGATGATATGTCGAAACTGACCAATCTGAAGGTTTTGCAGCTGGACAGTAACAGGTTTACCGGTTTTCTCCCTGAGAACA TCTGTGGGAGTCAAAGTCTGATAAACTTTACTGCCTATGATAACAACTTCACCGGTCCGGTTCCTAGATGCTTCAAGAACTGCACAACCTTTGTCCGGGT TCGCCTGGAAAACAACCAGTTCACTGGAAATGTTTCAGAGGATTTCGGTGTGTACCCGGATTTGCAGTTCATGGATCTCAGCGGGAATAACTTCTATGGT GAGGTGTCGCGCAACTGGGGGTCCTGTCCGAATTTGGCTACATTGCGGATTTCGGGTAACAATATCAGCGGTGTTATCCCTCCAGAGATTGGTAATATTT CTCAGCTACAAGCGCTTGATCTTTCTTCTAATCAGTTAGTTGGTCAGATCCCGAAACAGCTTGGTAATTTGACTTCCTTGGCGAGGCTGATACTCAATGG CAATCAACTCTATGGCGCTATCCCTTCAGAGTTCAATTCATTTACCGAAATGGAAGTGCTGGACCTGTCTTCAAATCGACTCAACCAGTCGCTTCCAACG AGTTTGGGAAATTTCGCGCAGCTAAACTACTTGAATTTGAGCAACAATGAGTTTAGCCAGATAATTCCTGACCAGTTGGGAAATCTGGTTCATTTGACAA CTCTTGATCTGAGCCGGAACTCGCTCAGCGGGTCGATTCCGGCAAGACTGAGTTCCTTATCCAGCTTGGAGCTCCTGAACATATCAAGAAACGATCTTTC TGGTTCTATCCCAGATGGGTTTGCACAAATCCCTTTACAGACGGTGGACATATCACATAACAAACTGCAGGGTGCTCTACCAAGCAGCAAGGCCTTCCAA AATGCTTCAATTGAAGAAGTAGTGGGGAATAGCGGCTTGTGTGGGAACATAGAAAGTTTAGAGCCTTGTCCTTCCACAACAACAGAGAAAGGTTCATCAA AGAGGAGCCGCACATTTTGGTTCTTGGTAATTTTCCTACCTGTTTTAGCAGCACTGATACTGGTATTGGCAATGTTCTGCGTATGCCGAAAAGGCAGAAT AGATGCGGAAGCTGAACTGCTACAGCAGCAGGAAGAGGATATCTTACTAATGCCAGGTTTCGATGGGAAGATAATGTACTCGGAGATCGTGAAAGCAACC GATAAATTCGACTCCAAGTATTGCGTGGGGAAAGGAGGGTATGGCAGCGTGTACAAAGCAATGCTGCCATCTGGGATCACCGTGGCAGTGAAAAAGGTCC ATCCTTTTCATGATAGTGAGGGGGTTTCTCAGGAGGAGTTCTTGAGAGAAATCAAAGCCCTGACCGAGATAAGGCATAGCAACATTGTCAAACTATATGG ATTCTGCTCCCATTCGCGGGACTCTTTCTTGGTTTACGAGTACCTCGAGAGAGGAAGTCTTGCATCCATCCTGAGAGATGAGCAAGAAGCTAGAGAATTG GATTGGGAGAAGAGGGTGAATATTGTGAGAGGCGTGGCTCATGCCTTGTCTTACTTGCACCACGACTGCTCCATCCCGATCGTCCACAGAGACATTACAA GCAACAATGTGTTGTTGGATTCCGATTACGAAGTTCGAGTGTCGGATTTTGGGACGGCCAAACTTCTCAACCATGATACCTCCCACTGGACTGCACAAGC CGGCACTCGTGGCTACATTGCTCCAGAGCTGGCGTACACTATGAAAGTAACGGAGAAATGTGACGTGTACAGCTTCGGCGTGTTGGCGCTGGAAGTGATC AGAGGGGATCATCCTGGGGAAATTGTGCTGTCATTGGCTTCTTCTACTGCGGCAGACAATGTGTTGCCACTTGATGATCTGATAGACCAGCGCCTCGCGC CTCCTTCGACGTTAATTCGCGAAGAACTGGAAACGTTGTTGAGGATTGCAGCAATATGTTTGAGCGCTGATCCGCAGTTTAGGCCGGAGATGAGATTGGC TTCGCAGATGTTGTCAAAGGACCAAATGAGCGTTCCTAATTACGAGAAAAAATAG
AA sequence Show only first row Show all	>Lus10020936 pacid=23177995 polypeptide=Lus10020936 locus=Lus10020936.g ID=Lus10020936.BGIv1.0 annot-version=v1.0 MFLNHLSGSLPDEIGNLTSLQYLSLHSNNFTGTIPPSMGRLTSIVQFHLYNNQLSGRIPPEVGDLNFVEDLELSENRLTGPVPSSIGNLSSLEILFLRVN RLSGFLPDDMSKLTNLKVLQLDSNRFTGFLPENICGSQSLINFTAYDNNFTGPVPRCFKNCTTFVRVRLENNQFTGNVSEDFGVYPDLQFMDLSGNNFYG EVSRNWGSCPNLATLRISGNNISGVIPPEIGNISQLQALDLSSNQLVGQIPKQLGNLTSLARLILNGNQLYGAIPSEFNSFTEMEVLDLSSNRLNQSLPT SLGNFAQLNYLNLSNNEFSQIIPDQLGNLVHLTTLDLSRNSLSGSIPARLSSLSSLELLNISRNDLSGSIPDGFAQIPLQTVDISHNKLQGALPSSKAFQ NASIEEVVGNSGLCGNIESLEPCPSTTTEKGSSKRSRTFWFLVIFLPVLAALILVLAMFCVCRKGRIDAEAELLQQQEEDILLMPGFDGKIMYSEIVKAT DKFDSKYCVGKGGYGSVYKAMLPSGITVAVKKVHPFHDSEGVSQEEFLREIKALTEIRHSNIVKLYGFCSHSRDSFLVYEYLERGSLASILRDEQEAREL DWEKRVNIVRGVAHALSYLHHDCSIPIVHRDITSNNVLLDSDYEVRVSDFGTAKLLNHDTSHWTAQAGTRGYIAPELAYTMKVTEKCDVYSFGVLALEVI RGDHPGEIVLSLASSTAADNVLPLDDLIDQRLAPPSTLIREELETLLRIAAICLSADPQFRPEMRLASQMLSKDQMSVPNYEKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020936 [exp]	0	1
AT4G21700			Protein of unknown function (D...		Lus10030937 [exp]	1.7	0.8547
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10018311 [exp]	5.1	0.7886
AT2G43590			Chitinase family protein (.1)		Lus10035620 [exp]	7.3	0.7842
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Lus10002742 [exp]	8.2	0.7804
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Lus10029170 [exp]	9.5	0.7778
AT2G33580			Protein kinase superfamily pro...		Lus10042226 [exp]	15.5	0.7490
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Lus10040165 [exp]	17.2	0.7481
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020935 [exp]	17.7	0.7617
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10002147 [exp]	18.2	0.7426
AT5G60590			DHBP synthase RibB-like alpha/...		Lus10041302 [exp]	18.9	0.7207

Compare expression of checked genes

Lus10020936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.