Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39650 54 / 2e-09 Protein of unknown function (DUF506) (.1) AT3G22970 41 / 8e-05 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G14620 39 / 0.0006 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000956 [exp] 63 / 1e-12 AT2G39650 266 / 1e-89 Protein of unknown function (DUF506) (.1) Lus10002695 [exp] 63 / 2e-12 AT2G39650 313 / 4e-107 Protein of unknown function (DUF506) (.1) Lus10023412 [exp] 54 / 3e-09 AT2G39650 273 / 2e-91 Protein of unknown function (DUF506) (.1) Lus10040293 [exp] 50 / 6e-08 AT2G39650 270 / 5e-90 Protein of unknown function (DUF506) (.1) Lus10003087 [exp] 38 / 0.001 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G056100 [exp] 58 / 9e-11 AT2G39650 293 / 3e-99 Protein of unknown function (DUF506) (.1) Potri.010G203700 [exp] 57 / 2e-10 AT2G39650 287 / 9e-97 Protein of unknown function (DUF506) (.1) Potri.005G216900 [exp] 42 / 4e-05 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.002G046300 [exp] 40 / 0.0001 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G159800 [exp] 39 / 0.0006 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10020938 pacid=23178015 polypeptide=Lus10020938 locus=Lus10020938.g ID=Lus10020938.BGIv1.0 annot-version=v1.0 ATGAATCCGGTTGTTTATGTGGGATTTTTGGATGGGCTTAAGCACCATCTCCAAGTCATTATTGAAGCTGCTAAGTCTTCGCTTAAACAAAACTCGATGC CTCTTCCTCCTTGGATTAACGCCTCCACCGATTTCCGCTCCCAAATCGACTACGTCGGCGGCTTGATACTCACCGGTCGACACGCCTTCCTTCCCCGCTC TCGAAATCCGCCGCTATGTCTCCGGCCGCTGCCACGACGTCCTCAACTTGGGTGCCGCAATCGACGCATCCCATTTCACGTGGAAAGGGGAATCGACGAT TGGATACCGCGAACTGATGGAGATGCGAAAACGTTGGAACCGGAAGCTCCGCTTGGGATATGTTTCCCTTGTTGGATTCGATCTAGATTTGGTTTATAG
AA sequence Show only first row Show all	>Lus10020938 pacid=23178015 polypeptide=Lus10020938 locus=Lus10020938.g ID=Lus10020938.BGIv1.0 annot-version=v1.0 MNPVVYVGFLDGLKHHLQVIIEAAKSSLKQNSMPLPPWINASTDFRSQIDYVGGLILTGRHAFLPRSRNPPLCLRPLPRRPQLGCRNRRIPFHVERGIDD WIPRTDGDAKTLEPEAPLGICFPCWIRSRFGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39650			Protein of unknown function (D...		Lus10020938 [exp]	0	1
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024300 [exp]	4.5	0.8681
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10039268 [exp]	4.5	0.8690
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10022246 [exp]	6.7	0.8603
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10000705 [exp]	6.9	0.8620
AT5G36930			Disease resistance protein (TI...		Lus10007809 [exp]	11.0	0.8614
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Lus10004076 [exp]	14.5	0.8280
AT5G40100			Disease resistance protein (TI...		Lus10000329 [exp]	18.0	0.8547
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	19.7	0.8386
AT2G25625			unknown protein		Lus10008096 [exp]	20.4	0.8141
AT5G61340			unknown protein		Lus10003483 [exp]	22.8	0.8081

Compare expression of checked genes

Lus10020938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.