Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78300 483 / 2e-175 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT1G35160 469 / 7e-170 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT4G09000 464 / 7e-168 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT3G02520 442 / 3e-159 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT5G38480 438 / 1e-157 RCI1, GRF3 general regulatory factor 3 (.1.2) AT5G16050 415 / 2e-148 GF14UPSILON, GRF5 general regulatory factor 5 (.1) AT5G10450 396 / 8e-141 14-3-3lambda, AFT1, GF14LAMBDA, GRF6 14-3-3 PROTEIN G-BOX FACTOR14 LAMBDA, G-box regulating factor 6 (.1.2.3.4) AT5G65430 394 / 2e-140 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) AT1G26480 359 / 3e-126 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT1G34760 348 / 6e-122 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036481 [exp] 497 / 0 AT1G78300 481 / 1e-174 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10008715 [exp] 491 / 4e-178 AT1G78300 459 / 2e-165 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10010349 [exp] 468 / 2e-169 AT1G78300 454 / 5e-164 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10017584 [exp] 448 / 2e-161 AT3G02520 471 / 1e-170 general regulatory factor 7 (.1) Lus10033545 [exp] 443 / 2e-159 AT3G02520 470 / 4e-170 general regulatory factor 7 (.1) Lus10035934 [exp] 387 / 2e-137 AT5G65430 450 / 1e-162 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10025727 [exp] 383 / 1e-135 AT5G65430 454 / 3e-164 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10040534 [exp] 375 / 4e-132 AT5G65430 439 / 1e-157 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10014899 [exp] 371 / 1e-130 AT5G65430 438 / 2e-157 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G162400 [exp] 489 / 1e-177 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.002G099800 [exp] 484 / 1e-175 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.004G101700 [exp] 442 / 4e-159 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.017G113300 [exp] 440 / 3e-158 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.005G157700 [exp] 376 / 3e-133 AT5G65430 427 / 1e-153 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Potri.002G103800 [exp] 365 / 7e-129 AT5G65430 429 / 4e-154 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Potri.011G110900 [exp] 365 / 9e-129 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.001G392200 [exp] 363 / 8e-128 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.008G095000 [exp] 355 / 2e-124 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.010G159300 [exp] 354 / 3e-124 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10020940 pacid=23177980 polypeptide=Lus10020940 locus=Lus10020940.g ID=Lus10020940.BGIv1.0 annot-version=v1.0 ATGGCAAGTTCCGCACGTGAAGAGAACGTCTACATGGCTAAACTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTTGACTTCATGGAGAAGGTCTCCG CGTCCATCGATGGCGATGAACTCACCGTCGAGGAGCGCAACCTCCTCTCGGTCGCCTACAAGAACGTGATCGGTGCACGCCGCGCCTCGTGGCGTATCAT TTCCTCCATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGACCACGTCAACACGATCCGCGACTACAGGAGCAAGATTGAGACTGAGCTCTCCGGGATC TGCGACGGGATCTTGAAATTGCTCGACACCAGGCTCATACCTTCCGCTGCTTCCGGTGACTCGAAGGTCTTCTACTTGAAGATGAAGGGTGATTATCACA GGTACCTTGCTGAGTTCAAGACCGGAGCTGAGAGGAAGGAGGCCGCTGAAAGCACCCTCAGCGCTTACAAATCTGCTCAGGAAATTGCCAATTCCGAATT GGCTCCAACCCACCCTATCCGTCTAGGATTGGCTCTCAACTTCTCAGTCTTTTATTATGAGATCCTGAATTCCCCTGATCGCGCTTGTAATCTCGCCAAA CAGGCATTCGATGAAGCCATTGCAGAGTTGGATACCCTGGGGGAGGAATCCTACAAGGACAGCACTTTGATCATGCAACTTCTCCGTGACAATCTCACCC TTTGGACTTCCGACATGCAGGATGATGGTGCAGACGAGATCAAGGACGCAGCACCAGCTGCGCCCAAAGGAGGGGAGGAACAGCAATGA
AA sequence Show only first row Show all	>Lus10020940 pacid=23177980 polypeptide=Lus10020940 locus=Lus10020940.g ID=Lus10020940.BGIv1.0 annot-version=v1.0 MASSAREENVYMAKLAEQAERYEEMVDFMEKVSASIDGDELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVNTIRDYRSKIETELSGI CDGILKLLDTRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLSAYKSAQEIANSELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAK QAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKDAAPAAPKGGEEQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10020940 [exp]	0	1
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10008715 [exp]	1.0	0.8400
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10036452 [exp]	1.4	0.8266
AT2G23070			Protein kinase superfamily pro...		Lus10011526 [exp]	1.7	0.8217
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10013338 [exp]	4.0	0.8110
AT4G34660			SH3 domain-containing protein ...		Lus10017501 [exp]	6.0	0.7658
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	9.5	0.7433
AT5G40740			unknown protein		Lus10014617 [exp]	13.3	0.7481
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10031066 [exp]	14.3	0.7818
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	22.8	0.7479
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10017626 [exp]	23.2	0.6842

Compare expression of checked genes

Lus10020940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.