Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22450 127 / 1e-36 ATCOX6B2, COX6B CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) AT4G28060 108 / 8e-31 Cytochrome c oxidase, subunit Vib family protein (.1) AT5G57815 104 / 4e-29 Cytochrome c oxidase, subunit Vib family protein (.1) AT1G32710 68 / 1e-14 Cytochrome c oxidase, subunit Vib family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008716 [exp] 249 / 2e-84 AT1G22450 173 / 4e-55 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10010345 [exp] 113 / 3e-32 AT1G22450 142 / 4e-46 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10036478 [exp] 111 / 1e-31 AT1G22450 146 / 2e-46 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10040123 [exp] 92 / 3e-23 AT1G22450 121 / 9e-36 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G100000 [exp] 152 / 3e-46 AT1G22450 123 / 2e-35 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Potri.005G162100 [exp] 135 / 1e-39 AT1G22450 152 / 4e-47 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Potri.018G099900 [exp] 110 / 2e-31 AT5G57815 147 / 3e-48 Cytochrome c oxidase, subunit Vib family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0351 [flax] [poplar] CHCH PF02297 [flax] [poplar] COX6B Cytochrome oxidase c subunit VIb
Representative CDS sequence Show only first row Show all	>Lus10020941 pacid=23177900 polypeptide=Lus10020941 locus=Lus10020941.g ID=Lus10020941.BGIv1.0 annot-version=v1.0 ATGGCCGAAGCTGCTGCAGCTGCTACCACCAATCCCCTTTCTCTATCTGAGCAATACTTGTTGAAGGAGGATGAGAAACCAGCTGTTAAAGATGAATCAG TTCCTGCTCCTGCTGATTCTGTAGAATCTGTCGCAGATAAGTCGGTGGAAATAGCTGAAGCCGTCCAAGAAAAAGCTGTAGAACCAGCAGAAGCTGTGGC AGAGAATACAAAAGAAGCGGCAGAAGCTGTGGTAGGGGAAGCTGCAGAAATTACAGAAGCTGTTGCCGTAGACAAAACTGAAGATTCTCCTGCTGTAGAT GCTACTGCTACGGAAGAATCTGACTCAAAAGATGCTCCTCCCTCTGTAGAAGAAACCACTGAACCTGCTCAAGAAAACTCTGGAAATGAAGAAGCTGCAG AAGAGGCACCTGAAATAAAGCTTGAGACTGCACCAGCAGATTACCGATTTCCAACCACAAACCAAACAAGGCATTGCTTTACTCGCTATATTGAGTATCA TCGATGCGTGGCTGCTAAAGGAGAAGATGCTCAAGAGTGTGATAAGTACGCCAAATTCTACCGTTCCCTTTGCCCCAGTGAATGGGGGAGAGATTTCGTT GGTGCAGGTGGCATGGGCGAACTTGCTGATGACGTCCAACCTGGTCCTCTCTTGGTGCGGCTGCTGTCCTTAGTCTATCTAGCCTCTTCTTAG
AA sequence Show only first row Show all	>Lus10020941 pacid=23177900 polypeptide=Lus10020941 locus=Lus10020941.g ID=Lus10020941.BGIv1.0 annot-version=v1.0 MAEAAAAATTNPLSLSEQYLLKEDEKPAVKDESVPAPADSVESVADKSVEIAEAVQEKAVEPAEAVAENTKEAAEAVVGEAAEITEAVAVDKTEDSPAVD ATATEESDSKDAPPSVEETTEPAQENSGNEEAAEEAPEIKLETAPADYRFPTTNQTRHCFTRYIEYHRCVAAKGEDAQECDKYAKFYRSLCPSEWGRDFV GAGGMGELADDVQPGPLLVRLLSLVYLASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10020941 [exp]	0	1
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10008716 [exp]	1.0	0.8389
AT3G27240			Cytochrome C1 family (.1)		Lus10041579 [exp]	1.4	0.7482
AT1G32260			unknown protein		Lus10030982 [exp]	8.4	0.5963
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10019546 [exp]	9.7	0.6535
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	14.1	0.6358
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10014727 [exp]	21.4	0.6723
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10016418 [exp]	22.1	0.6211
AT1G42480			unknown protein		Lus10030732 [exp]	24.2	0.5975
AT1G75420			UDP-Glycosyltransferase superf...		Lus10024281 [exp]	33.1	0.6194
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10034535 [exp]	38.6	0.6031

Compare expression of checked genes

Lus10020941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.