Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09040 216 / 4e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G35410 121 / 2e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 85 / 9e-19 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT3G52380 81 / 3e-17 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT2G37220 74 / 7e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G36660 67 / 4e-12 PAB7 poly(A) binding protein 7 (.1) AT3G16380 66 / 5e-12 PAB6 poly(A) binding protein 6 (.1) AT5G50250 61 / 2e-10 CP31B chloroplast RNA-binding protein 31B (.1) AT4G34110 60 / 7e-10 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT3G53460 56 / 6e-09 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008721 [exp] 542 / 0 AT4G09040 218 / 8e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10041138 [exp] 217 / 3e-69 AT4G09040 201 / 7e-63 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10036468 [exp] 173 / 1e-52 AT4G09040 164 / 3e-49 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10035678 [exp] 116 / 4e-30 AT2G35410 231 / 2e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10037265 [exp] 114 / 2e-29 AT2G35410 234 / 1e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023723 [exp] 82 / 1e-17 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10026514 [exp] 73 / 1e-14 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017962 [exp] 72 / 3e-14 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1) Lus10041952 [exp] 71 / 1e-13 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G161000 [exp] 256 / 2e-84 AT4G09040 219 / 5e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G141300 [exp] 111 / 1e-28 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G090200 [exp] 93 / 1e-21 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.008G172100 [exp] 90 / 8e-21 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 87 / 8e-20 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.015G086500 [exp] 87 / 1e-19 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.009G065900 [exp] 75 / 1e-15 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G090700 [exp] 73 / 9e-15 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G202000 [exp] 73 / 1e-14 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.014G157300 [exp] 62 / 6e-12 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10020945 pacid=23177961 polypeptide=Lus10020945 locus=Lus10020945.g ID=Lus10020945.BGIv1.0 annot-version=v1.0 ATGGCTTCGCTGCTCCGGCTTTCCTGTTCTCCGGCGCCGTCCTTCTCCGCCGAGCACACAGTTCCTTATCTTCAACGCTCCTTTCCTTACCGCCAAGCCC TTTCCGTTACTCAGCTTCCCACTCACTCGCGTTCCATTGCAATTGGAACCGTCGCTGCCAGCCGCTTATCTCCTGTTTGTTCTACTACCGCTACTCAAGA TCCAGTTGCTGCAGAAAAAGAGTCAGTTAAGACCGACGAAAAAGAAGAAGAATTCTCTACAACTAGAGTGTTGGCTACGAATATCCCATGGACTGCTACC GCAGAAGACATGCGAGCTCTCTTCGAGAAGTTCGGAAAAGTTGTTGACGTTGAGCTTTCGATGTACGGGAAGAACCTGAATAGAGGGCTGGTGTTCGTCT CTATGGGCTCTCCGGAAGAGGCTCATGCTGCCATGGAAAACCTCCAGTCTTATGAATATGAGGGGCGTGTCCTAACAATGAAGTATGCCAAGCTCAAGAA GAAGAAGGCAACACCAATCTTTCTGAAGATGGCACCAACGTACAGCTTGTTTGTTTCAAATCTGCCATTTGAAGCCAAGGAGAAAGATCTCAAGGAGTTG TTCGTGGCAGGAGGGGCTAATGTTGTCTATACAGAGATAATATATCATGCTAATCCTAGAAAGTCCTCTGGCTACGGATTTGTAGCCTTCAAAACGAAAA AGGAAGCTGAAGATGCTCTTTCAGCTTTCCAAGATAAGGAACTTTTGGGAAGACCACTTCGAGTGGCTCGTAGCAAACAATTTGTAAGGCCGCCACGATC TCAAGTTGCTGTAGCAGATGCTGCTACAGAGACTAACATCAGTGCTGCCATAGAAGAGGCCGATGATACAATTGATAAGACGACTTAA
AA sequence Show only first row Show all	>Lus10020945 pacid=23177961 polypeptide=Lus10020945 locus=Lus10020945.g ID=Lus10020945.BGIv1.0 annot-version=v1.0 MASLLRLSCSPAPSFSAEHTVPYLQRSFPYRQALSVTQLPTHSRSIAIGTVAASRLSPVCSTTATQDPVAAEKESVKTDEKEEEFSTTRVLATNIPWTAT AEDMRALFEKFGKVVDVELSMYGKNLNRGLVFVSMGSPEEAHAAMENLQSYEYEGRVLTMKYAKLKKKKATPIFLKMAPTYSLFVSNLPFEAKEKDLKEL FVAGGANVVYTEIIYHANPRKSSGYGFVAFKTKKEAEDALSAFQDKELLGRPLRVARSKQFVRPPRSQVAVADAATETNISAAIEEADDTIDKTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10020945 [exp]	0	1
AT2G24090			Ribosomal protein L35 (.1)		Lus10007706 [exp]	5.3	0.9341
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10005013 [exp]	6.5	0.9287
AT1G64510			Translation elongation factor...		Lus10032419 [exp]	11.9	0.9282
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10039810 [exp]	12.2	0.9255
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Lus10008993 [exp]	12.6	0.8986
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10000288 [exp]	13.5	0.9071
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	14.8	0.9189
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10032665 [exp]	16.7	0.9061
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	18.5	0.9143
AT4G02530			chloroplast thylakoid lumen pr...		Lus10030109 [exp]	23.0	0.9059

Compare expression of checked genes

Lus10020945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.