Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24380 327 / 2e-114 unknown protein AT5G65400 252 / 7e-85 alpha/beta-Hydrolases superfamily protein (.1) AT1G09280 78 / 2e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008722 [exp] 447 / 2e-162 AT4G24380 320 / 7e-112 unknown protein Lus10000004 [exp] 167 / 1e-53 AT4G24380 123 / 2e-37 unknown protein Lus10008045 [exp] 67 / 2e-12 AT1G09280 748 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G102500 [exp] 352 / 2e-124 AT4G24380 334 / 1e-117 unknown protein Potri.006G027000 [exp] 202 / 1e-64 AT4G24380 211 / 4e-68 unknown protein Potri.005G011300 [exp] 69 / 2e-13 AT1G09280 773 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03959 [flax] [poplar] FSH1 Serine hydrolase (FSH1)
Representative CDS sequence Show only first row Show all	>Lus10020946 pacid=23177923 polypeptide=Lus10020946 locus=Lus10020946.g ID=Lus10020946.BGIv1.0 annot-version=v1.0 ATGGGGTCGGAAGGCGAGATGCCGCCGGTGGGGAGGAAACCAAGGTTTCTATGCTTACACGGGTTCAGAACCAGCGCAGAAATCCTAAAGAAGCAGCTCA ACACGAAATGGCCCGAATCTGTTATCCAGAAGCTGGACCTCGTCTACGTAGACGCCCCTCATCCCTCGGAGGGAAAATCTGAGGTCGAAGGCATATTTGA TCCTCCTTATTACGAGTGGTTCCAGTTCAACAAGGAGTTCACAGAATACAGGAACTTCGACGAATGCTTAGCGTATATTGAAGAGTGCATGATCAAACAT GCTCCAATCGACGGCCTCCTCGGTTTCTCACAGGGAGCCATCTTGTCGGCTGGACTTCCTGGCCTCCAAGCTAAGGGTTTGGCTCTGACGAAGGTGCCCA AGATAAAGTTCCTGGTAATAATTGGAGGGGCGAAATTCAAGGCACAATCTGTAGCTGAAAACGCATACGCATCTCCTGTTCAATGCCCTTCGCTTCACTT CCTGGGGGAGTTGGATTTCTTGAAGCCATATGGGAAAGAACTGCTGGAATCATGTTCAGATGCTGTGATAGTTCATCACCCAAAGGGGCATACCATCCCC AGGCTTGATGAGAAGGGAATGGCTACTGTGACGAGCTTTATTGAAAAGATTCAGAATTTGGTGTCGGGAGAAGGGAAGGACGATGCCAAATAA
AA sequence Show only first row Show all	>Lus10020946 pacid=23177923 polypeptide=Lus10020946 locus=Lus10020946.g ID=Lus10020946.BGIv1.0 annot-version=v1.0 MGSEGEMPPVGRKPRFLCLHGFRTSAEILKKQLNTKWPESVIQKLDLVYVDAPHPSEGKSEVEGIFDPPYYEWFQFNKEFTEYRNFDECLAYIEECMIKH APIDGLLGFSQGAILSAGLPGLQAKGLALTKVPKIKFLVIIGGAKFKAQSVAENAYASPVQCPSLHFLGELDFLKPYGKELLESCSDAVIVHHPKGHTIP RLDEKGMATVTSFIEKIQNLVSGEGKDDAK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24380			unknown protein		Lus10020946 [exp]	0	1
AT4G24380			unknown protein		Lus10000004 [exp]	1.0	0.8673
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10024293 [exp]	6.7	0.7719
AT2G37570		SLT1	sodium- and lithium-tolerant 1...		Lus10024406 [exp]	8.7	0.7813
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10010476 [exp]	11.1	0.7719
AT1G13510			Protein of unknown function (D...		Lus10031915 [exp]	24.5	0.6795
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10004968 [exp]	30.6	0.7506
AT4G39235			unknown protein		Lus10021065 [exp]	32.6	0.7711
AT2G18680			unknown protein		Lus10015508 [exp]	40.8	0.7426
AT3G14430			unknown protein		Lus10030201 [exp]	41.1	0.7103
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10006176 [exp]	45.9	0.7190

Compare expression of checked genes

Lus10020946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.