Plant FIBer expression Database

Lus10020947 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14600 210 / 2e-71 Target SNARE coiled-coil domain protein (.1)
AT1G29060 188 / 8e-63 Target SNARE coiled-coil domain protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008723
[exp]
273 / 2e-96 AT4G14600 211 / 6e-72 Target SNARE coiled-coil domain protein (.1)
Lus10041130
[exp]
234 / 1e-80 AT4G14600 189 / 4e-63 Target SNARE coiled-coil domain protein (.1)
Lus10036461
[exp]
138 / 3e-43 AT4G14600 109 / 5e-32 Target SNARE coiled-coil domain protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G159600
[exp]
207 / 2e-70 AT4G14600 194 / 3e-65 Target SNARE coiled-coil domain protein (.1)
Potri.002G102400
[exp]
199 / 2e-67 AT4G14600 163 / 5e-53 Target SNARE coiled-coil domain protein (.1)
PFAM info
Representative CDS sequence
>Lus10020947 pacid=23178023 polypeptide=Lus10020947 locus=Lus10020947.g ID=Lus10020947.BGIv1.0 annot-version=v1.0
ATGGCCGCCAGTTCCAGCCGAGGAGGCGCCTTCTACGGCGGTGCTACTCCCTTTCGATCAAGGGATGGACTTAGTACGAGGCAGGCGGCCAGCTCGGACG
AAATACAGCTACGAATTGATCCGATGAGCTCCGATTTCGACGATGAGATCACCGGCCTCCGTTCTCAAGTCAAGCAACTTAGAAATGTGGCTCAGGAAAT
CGGGACAGAAGCAAAATTCCAAAAGGATTTTCTTGATCAATTGCAAATGACAGTGATCAAAGCTCAAGCAAGCGTGAAGAACAACATCAGAAAGCTGAAC
AAGAGCATAATCAAGAGTGGATCGAATCACATAGTACACGTGGTTCTTTTCTCGCTGTTTTGCTTCTTCATGGTCTACCTGTGGTCTAAGGTATCCAGAA
AATGA
AA sequence
>Lus10020947 pacid=23178023 polypeptide=Lus10020947 locus=Lus10020947.g ID=Lus10020947.BGIv1.0 annot-version=v1.0
MAASSSRGGAFYGGATPFRSRDGLSTRQAASSDEIQLRIDPMSSDFDDEITGLRSQVKQLRNVAQEIGTEAKFQKDFLDQLQMTVIKAQASVKNNIRKLN
KSIIKSGSNHIVHVVLFSLFCFFMVYLWSKVSRK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G14600 Target SNARE coiled-coil domai... Lus10020947
[exp]
0 1
AT5G58740 HSP20-like chaperones superfam... Lus10018234
[exp]
8.2 0.8874
AT2G27490 ATCOAE dephospho-CoA kinase family (.... Lus10002109
[exp]
8.4 0.8758
AT5G02270 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRI... Lus10010838
[exp]
13.3 0.8797
AT1G68090 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5... Lus10037992
[exp]
18.4 0.8682
AT5G62200 Embryo-specific protein 3, (AT... Lus10027387
[exp]
19.7 0.8580
AT1G30090 Galactose oxidase/kelch repeat... Lus10028121
[exp]
21.1 0.8696
AT1G02305 Cysteine proteinases superfami... Lus10007212
[exp]
23.4 0.8797
AT4G12790 P-loop containing nucleoside t... Lus10036411
[exp]
25.0 0.8762
AT3G15352 ATCOX17 ARABIDOPSIS THALIANA CYTOCHROM... Lus10037356
[exp]
25.0 0.8665
AT3G11780 MD-2-related lipid recognition... Lus10013366
[exp]
26.1 0.8633

Lus10020947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.