Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27460 117 / 5e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 83 / 1e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09450 82 / 2e-17 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80270 70 / 3e-13 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) AT1G02150 68 / 1e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 64 / 1e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 62 / 1e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G28020 61 / 2e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15480 58 / 3e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 57 / 3e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008724 [exp] 315 / 7e-105 AT5G27460 492 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 83 / 1e-17 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016229 [exp] 66 / 5e-12 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10034221 [exp] 63 / 4e-11 AT5G09450 453 / 1e-158 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029043 [exp] 63 / 4e-11 AT5G09450 443 / 1e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 63 / 5e-11 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 63 / 5e-11 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010430 [exp] 63 / 8e-11 AT1G80270 651 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10024781 [exp] 62 / 9e-11 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160100 [exp] 125 / 2e-32 AT5G27460 532 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 86 / 1e-18 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G050300 [exp] 77 / 7e-16 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G048500 [exp] 73 / 2e-14 AT5G09450 446 / 8e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 71 / 1e-13 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G132700 [exp] 66 / 4e-12 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G194400 [exp] 64 / 3e-11 AT1G02370 466 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G132500 [exp] 63 / 5e-11 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G042500 [exp] 62 / 9e-11 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G036100 [exp] 61 / 2e-10 AT1G80270 634 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020948 pacid=23177998 polypeptide=Lus10020948 locus=Lus10020948.g ID=Lus10020948.BGIv1.0 annot-version=v1.0 ATGGCGATTCGCGCGTTTATTTGCAGTCTCAGACATGCGAAGCTTGAGTCCGCCGCGAGGTCGATTTCCTCCGTCGCTCCCGGTAGCTATCTCACGGTTT GCCGGAACACCAAGATCAAGGATGAAGGTTCGAAGCTGAGATTTCCTCACGGAGAAAGTCCGGCGACTATTCTAAAAAAGTGGACTGATGAAGGACGAAG ATTCGCTTTGCCAGAGCTCAAACGTGGATACAAGAAGCTCCTTAGGGCTGAACGCCACCTTGACGCACTCGAGATACTAGAATGGATGGAAGTTCATAGC AAAAGCCAAATGTCAGCGGTGGATTACGCCAATGGGCTCGAGCTAACCATCAGGTTGAGAGGTATAACCAAGGCTGAAAAGTATTTCGAACGCCTGCCGA ATTCTGCTTCACGTAGAGCAGCTTTTCTGCCGGTTCTATCTACGTATGTCAAACAACGAAACACGATTAAAGCAGAGGCATTCATGGTGAAACTGAATGA GCTGGGCGGGAACCCGAATTACAAAACATGGGAGATCCTGATTGAAGGTTGGGTAAAATCAGGAGAGACGGACAAGGCCATTAGTGCCATGATAAGAGGG TTGAGTAGACTGAAAGATTGCCATTGGAGGCCTTCGGAGAACATCTTGATGGCAGTTGCAGAGTTCTTTGAGAAACAAGGGAATCTGAAAGATGCAATTG ACTATCTTAGGATTATCCATCATTTGGGTATCTCAAGCTTTACCATTGTACAAACTACTGCTCAGATTCCACCATTCGGCTTCAAAACCAGCTTTTGGAT CCTTGATATGATGAAGGATGAAATTCAGATGGATGAGTAG
AA sequence Show only first row Show all	>Lus10020948 pacid=23177998 polypeptide=Lus10020948 locus=Lus10020948.g ID=Lus10020948.BGIv1.0 annot-version=v1.0 MAIRAFICSLRHAKLESAARSISSVAPGSYLTVCRNTKIKDEGSKLRFPHGESPATILKKWTDEGRRFALPELKRGYKKLLRAERHLDALEILEWMEVHS KSQMSAVDYANGLELTIRLRGITKAEKYFERLPNSASRRAAFLPVLSTYVKQRNTIKAEAFMVKLNELGGNPNYKTWEILIEGWVKSGETDKAISAMIRG LSRLKDCHWRPSENILMAVAEFFEKQGNLKDAIDYLRIIHHLGISSFTIVQTTAQIPPFGFKTSFWILDMMKDEIQMDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10020948 [exp]	0	1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10036865 [exp]	1.4	0.8496
AT2G43630			unknown protein		Lus10010586 [exp]	2.0	0.8463
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10040068 [exp]	7.3	0.8435
AT5G25080			Sas10/Utp3/C1D family (.1)		Lus10026882 [exp]	7.9	0.8313
AT2G26840			unknown protein		Lus10036059 [exp]	9.4	0.8135
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10014522 [exp]	10.2	0.8437
AT3G12930			Lojap-related protein (.1)		Lus10002544 [exp]	10.3	0.8662
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10015898 [exp]	10.8	0.7606
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Lus10029347 [exp]	17.0	0.8267
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043251 [exp]	19.0	0.8379

Compare expression of checked genes

Lus10020948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.