Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28210 407 / 4e-141 ATJ1 DNAJ heat shock family protein (.1.2) AT5G48030 245 / 3e-77 GFA2 gametophytic factor 2 (.1) AT2G22360 203 / 2e-61 DNAJ heat shock family protein (.1) AT1G80030 196 / 6e-58 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT4G39960 192 / 3e-57 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G17830 172 / 4e-49 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G20560 98 / 6e-23 DNAJ heat shock family protein (.1) AT1G59725 97 / 1e-22 DNAJ heat shock family protein (.1) AT1G10350 92 / 1e-20 DNAJ heat shock family protein (.1) AT5G25530 90 / 8e-20 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027634 [exp] 252 / 3e-80 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10011934 [exp] 252 / 4e-80 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1) Lus10035855 [exp] 243 / 1e-76 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 239 / 1e-74 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10023148 [exp] 202 / 5e-61 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 202 / 8e-61 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023122 [exp] 192 / 2e-56 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 191 / 4e-56 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10035920 [exp] 181 / 9e-53 AT2G22360 619 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160200 [exp] 491 / 2e-173 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.001G271300 [exp] 250 / 2e-79 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 249 / 7e-79 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.007G094900 [exp] 204 / 7e-62 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 201 / 2e-60 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 194 / 2e-57 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.015G035300 [exp] 168 / 4e-47 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.008G018800 [exp] 112 / 2e-27 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 106 / 2e-25 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 103 / 3e-24 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020949 pacid=23177954 polypeptide=Lus10020949 locus=Lus10020949.g ID=Lus10020949.BGIv1.0 annot-version=v1.0 ATGAATATTGTTGTCGAAGTTGTTTTCCATTTACCAGGATATCTTCATGATAAGAAGCGCAGCTATTATGATGTTCTTGGCGTTCCTGATAATGCTAGCA AGGAAGAGATTAAGAAAGCCTTTCGTATGCTGGCAAAGAAGTACCACCCTGACGCAAACAAGAACAATCCTGCTGCAAATGAAATTTTTCTAGAGATACA AGAAGCCTATGAGACTTTGCAAGATTCGGATAAGAGGACACAATATGACAGGATGCGGACTGTAAGTGACAAGGCAGGATATGGTTTCGGAGATGCACAT GGGTTTAAATACGATGCAAGTGATGCGACGGGATTTGGATATGGTACTGGCGATGCGAGGAACTTCAGATATTCTTACAATACCAATTTCTCAGATTCGT TTCAGAAAATCTTCTCTGAGATCTTTGAAGAGGAGATCAATCCAGCTTCATCTGACATTCGAGCAGAGGTAGTTCTTTCTTTCTCTGAAGCTGCAACTGG ATGTACAAAGCAGCTGTCATTTGATGCGTCTATGCCTTGTGATTCTTGTGATGGGAGGGGCTATCCTACTGATGCTGAGACAAGATTGTGTTCAACTTGT AGAGGAATGGGGAAGGTTACAATTCCTCCATTCATAACGTCATGCAGTATGTGCAAAGGGTCAGGAAGGATCATTAAGGGGCACTGCATGTCATGCAGAG GGTTAGGGGTTGTTGAAGGCATTAAAGAAGTTAAAGTAACAATTCCACCAGGTGTGGATTCAGGAGATACGATCCGTGTGCCTGAAGCTGGTAATGTCGG GAGACGAGGAAGTCAACCAGGCACCCTTTTTATTCATATAAAGGTTGCTGATGATCCTATATTTACTAGAGATGGTGCAGATATTTATGTGGATGCATAT ATTAGTTTTACCAAAGCTATTCTTGGGGGCAAAATTGAGGTGCCAACGTTGTCAGGGAATACACAAGTACAAATACCAAGGAGAGTTCAGCATGGACAAC TTTTGGTACTGAGACGTAAAGGATTGCCCCGGCATGGTTTTCTTGTGAATCATGGAGATCAATATGTGCGATTTCGGATCAACCTCCCAACGTAA
AA sequence Show only first row Show all	>Lus10020949 pacid=23177954 polypeptide=Lus10020949 locus=Lus10020949.g ID=Lus10020949.BGIv1.0 annot-version=v1.0 MNIVVEVVFHLPGYLHDKKRSYYDVLGVPDNASKEEIKKAFRMLAKKYHPDANKNNPAANEIFLEIQEAYETLQDSDKRTQYDRMRTVSDKAGYGFGDAH GFKYDASDATGFGYGTGDARNFRYSYNTNFSDSFQKIFSEIFEEEINPASSDIRAEVVLSFSEAATGCTKQLSFDASMPCDSCDGRGYPTDAETRLCSTC RGMGKVTIPPFITSCSMCKGSGRIIKGHCMSCRGLGVVEGIKEVKVTIPPGVDSGDTIRVPEAGNVGRRGSQPGTLFIHIKVADDPIFTRDGADIYVDAY ISFTKAILGGKIEVPTLSGNTQVQIPRRVQHGQLLVLRRKGLPRHGFLVNHGDQYVRFRINLPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28210		ATJ1	DNAJ heat shock family protein...		Lus10020949 [exp]	0	1
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10027084 [exp]	3.9	0.8222
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10022388 [exp]	7.1	0.7848
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10030543 [exp]	8.7	0.8107
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10029715 [exp]	13.8	0.7589
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Lus10020396 [exp]	15.3	0.7591
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10010858 [exp]	16.4	0.7258
AT5G14850			Alg9-like mannosyltransferase ...		Lus10033296 [exp]	16.7	0.7736
AT2G25830			YebC-related (.1)		Lus10011628 [exp]	19.0	0.7517
					Lus10036475 [exp]	20.0	0.7492
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	21.3	0.7663

Compare expression of checked genes

Lus10020949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.