Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65380 450 / 3e-155 MATE efflux family protein (.1) AT5G10420 430 / 3e-147 MATE efflux family protein (.1) AT5G44050 413 / 1e-140 MATE efflux family protein (.1) AT1G33110 356 / 2e-118 MATE efflux family protein (.1.2) AT1G33100 348 / 3e-115 MATE efflux family protein (.1) AT1G33080 347 / 1e-114 MATE efflux family protein (.1.2) AT1G33090 337 / 6e-111 MATE efflux family protein (.1) AT1G47530 336 / 2e-110 MATE efflux family protein (.1) AT3G26590 330 / 3e-108 MATE efflux family protein (.1) AT5G38030 327 / 7e-107 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002645 [exp] 467 / 9e-162 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 465 / 4e-161 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10015903 [exp] 449 / 3e-154 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 442 / 2e-152 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 419 / 1e-139 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10003869 [exp] 365 / 6e-122 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10015904 [exp] 334 / 2e-112 AT5G10420 205 / 2e-62 MATE efflux family protein (.1) Lus10036854 [exp] 336 / 5e-110 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 330 / 3e-108 AT1G47530 704 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160700 [exp] 584 / 0 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.007G010200 [exp] 463 / 2e-160 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 461 / 2e-159 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 367 / 2e-122 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.002G102000 [exp] 345 / 8e-116 AT5G65380 437 / 7e-152 MATE efflux family protein (.1) Potri.019G063500 [exp] 342 / 3e-112 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.013G069600 [exp] 329 / 5e-108 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.015G139400 [exp] 324 / 7e-106 AT3G03620 548 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 323 / 2e-105 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.013G069400 [exp] 322 / 6e-105 AT3G03620 527 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10020951 pacid=23177891 polypeptide=Lus10020951 locus=Lus10020951.g ID=Lus10020951.BGIv1.0 annot-version=v1.0 ATGAGAGAATCTACAGAGAAAGTTCATCTACTTGCTCCAAGCAAGCCAGATATTCAGTCTCAGGAATCCCAATCCTGTTCGACCAATCATCCTCCTCAAT CAGCTGGTTTCATCACCGATATATGGCTGGAATCGAAGAAGATGTGGCTAATTGCTGGGCCTTCAATCTTCAGCCGGGTCGCCATGTTCTCGTTAACTGT CGTCACCCAATCCTTCGCCGGCCACTTGGGCGACCTCAATCTCGCTGCCATCTCCATCGTCTGTACCATCATCATCGGCATTAGTTTCGGCTTCTTGCTA GGAATGGCGAGTGCGCTGGAGATGTTGTGCGGCCAAGCCTACGGAGCCAAACAGTACCATATGTTAGGGATTTATATGCAACGTTCTTGGATTGTTCTCA CAATATGTTCAGTACTGCTTTTGCCGTTATTTCTGTTCGCCGCCCCGATACTGGAATTGATGGGGCAGCCGGCGGATGTTGCTGAGCTGACAGGTCTAGT GGCTTTATGGTTAATACCTTTTCACTTGAGTTTCCCATTTCAGTTCTCATTGCATAGATTCTTACAGTGCCAGCTTAAGACTGGAGTCATAGTTTGGGTC TCCGGTGGAGCTCTTCTTCTCCATGTCCTAGTGAGTTGGTTTTTCGTTTACAAGATGCGTGTTGGGATCGTCGGGACTGCTATCACTCTCGATTTCTCTT GGTGGATTACTGTCTTGGCCATGTTTCTCTACTGTACATGTGGTGGCTGTCCCGAATGCTGGACTGGATTCTCTGCTCAAGCTTTTGTTGGACTTTGGGA CTTCTTCAAACTTGCTGTAGCCTCTGGGGTTATGCTTACGTTGGAGAACTTCTATTACAGGGTGTTGATCATAGTTTCTGGCTATATGCAGAATGTCAAA GTTGCAGTTGATGCTCTTTCTATCTGCATAACAATTTATAGCTGGGAGTCCATGATTCCACTTGGATATTTGGCTGCAGCAGGGGTCCGTGTTGCTCATC AGCTTGGCGCAGGGAACGCAAAAGGGGCCCAATTTGCGGCCCTAGTGTCCGTGGTGACATCACTAGCAACTACTATATTCTTTGGGTTAATTGTCCTGGT CTTTCCCGAAAACCTAGCTGCAGTCTTTACATCAAGCTTCCCCGTTATGACAATGGTCAAAGACATGGCAGCATTGCTGGCTTTCACCATCATGTTCAAC TCTATTCAACCTGTTCTTTCTGGTGTGGCAGTTGGATCAGGTTGGCAAGGAGTAGTAGCATTTGTGAATCTTGGAAGTTACTACATTGTTGGGGTACCAC TTGGAGTGTTGTTGGGTTGGGTGCTTCAGTATGGTCTTCGAGGACTTTGGGGAGGAATGCTCGTTGGAACCGTGGTTCAAACAGTGGTGCTGACTGTAAT CACCATGAAATACCAGTGGGAGAAAGAGGCTGAGAAAGCTCAATCCCGGCAGACATAA
AA sequence Show only first row Show all	>Lus10020951 pacid=23177891 polypeptide=Lus10020951 locus=Lus10020951.g ID=Lus10020951.BGIv1.0 annot-version=v1.0 MRESTEKVHLLAPSKPDIQSQESQSCSTNHPPQSAGFITDIWLESKKMWLIAGPSIFSRVAMFSLTVVTQSFAGHLGDLNLAAISIVCTIIIGISFGFLL GMASALEMLCGQAYGAKQYHMLGIYMQRSWIVLTICSVLLLPLFLFAAPILELMGQPADVAELTGLVALWLIPFHLSFPFQFSLHRFLQCQLKTGVIVWV SGGALLLHVLVSWFFVYKMRVGIVGTAITLDFSWWITVLAMFLYCTCGGCPECWTGFSAQAFVGLWDFFKLAVASGVMLTLENFYYRVLIIVSGYMQNVK VAVDALSICITIYSWESMIPLGYLAAAGVRVAHQLGAGNAKGAQFAALVSVVTSLATTIFFGLIVLVFPENLAAVFTSSFPVMTMVKDMAALLAFTIMFN SIQPVLSGVAVGSGWQGVVAFVNLGSYYIVGVPLGVLLGWVLQYGLRGLWGGMLVGTVVQTVVLTVITMKYQWEKEAEKAQSRQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65380			MATE efflux family protein (.1...		Lus10020951 [exp]	0	1
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	7.0	0.7273
AT4G00590			N-terminal nucleophile aminohy...		Lus10040935 [exp]	7.6	0.7229
AT4G14145			unknown protein		Lus10040412 [exp]	12.5	0.6609
AT2G41020			WW domain-containing protein (...		Lus10027285 [exp]	12.5	0.6947
AT5G38600			Proline-rich spliceosome-assoc...		Lus10003067 [exp]	15.0	0.6568
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	15.2	0.6734
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10039455 [exp]	16.4	0.7090
AT3G12040			DNA-3-methyladenine glycosylas...		Lus10021071 [exp]	22.6	0.6560
AT2G39580			unknown protein		Lus10029459 [exp]	24.5	0.6661
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	24.6	0.6804

Compare expression of checked genes

Lus10020951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.