Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65380 588 / 0 MATE efflux family protein (.1) AT5G44050 561 / 0 MATE efflux family protein (.1) AT5G10420 548 / 0 MATE efflux family protein (.1) AT1G33110 436 / 9e-150 MATE efflux family protein (.1.2) AT1G33100 431 / 3e-148 MATE efflux family protein (.1) AT1G47530 421 / 4e-144 MATE efflux family protein (.1) AT1G33090 416 / 3e-142 MATE efflux family protein (.1) AT1G33080 413 / 6e-141 MATE efflux family protein (.1.2) AT4G00350 395 / 3e-133 MATE efflux family protein (.1) AT3G21690 390 / 1e-131 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015903 [exp] 807 / 0 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10002645 [exp] 619 / 0 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 615 / 0 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 563 / 0 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10020951 [exp] 474 / 5e-165 AT5G65380 543 / 0.0 MATE efflux family protein (.1) Lus10003869 [exp] 448 / 1e-154 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10042130 [exp] 419 / 2e-143 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 412 / 6e-141 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 409 / 6e-139 AT3G26590 666 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G102100 [exp] 655 / 0 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 620 / 0 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 529 / 0 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.002G102000 [exp] 479 / 2e-168 AT5G65380 437 / 7e-152 MATE efflux family protein (.1) Potri.013G069700 [exp] 454 / 5e-157 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.015G139400 [exp] 409 / 2e-139 AT3G03620 548 / 0.0 MATE efflux family protein (.1) Potri.015G147600 [exp] 408 / 5e-139 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.019G063500 [exp] 406 / 1e-137 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.013G069400 [exp] 404 / 1e-137 AT3G03620 527 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 403 / 5e-137 AT3G21690 656 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10020952 pacid=23177937 polypeptide=Lus10020952 locus=Lus10020952.g ID=Lus10020952.BGIv1.0 annot-version=v1.0 ATGGACCAAATATCCACCGCCGACGACGAAAATGACAAACTCTCGTCCAAGCTGTGGATTGAAACAAAGAAACTATGGCAGATCGTTGGACCCGCCCTCT TCAGTCGCATCGCCTCCTTCGCCATGAACATCATCACCCTAGCCTTCGCTGGCCACCTCGGCGACGTGGAGCTCGCCGCCATCTCCATCGCCAACACCGT CATCGTCGGCTTCAATTTCGGCCTCCTCCTCGGGATGGCGAGTGCACTCGAGACGCTATGCGGACAAGCGTTCGGAGCAAAGCACTACCACATGCTGGGA ATCTACGTACAGAGGTCATGGATAGTGTTGTTCTGCTGCTGCTTCCTTCTCCTCCCACTCTACGCCTTCGCCACTCCGGTCCTGAAGTGGCTCGGTCAGC CGGATGACGTGGCGGAGATGTCCGGTGAGGTGGCACTCTGGCTAATCCCTCTCCACTTCAGCTTCGCGTTCCAGTTCCCGCTCCGGCGGTTTCTGCAGTG CCAGCTCAAAAACAACGTCATAGCTTGGGTCTCTCTCGTGGCCTTGCTGGTCAACATCCTGACCAGCTGGCTGTTTATGTATGTCTGGGAATTTGGTGTA GTCGGAGCAGCCATTGCTCTTGACGTGTCGTGGTGGGTCCTGGTGTTCGGGATGCTTGCTTATGCTCTGCTTGGTGGTTGTCCTCTGACTTGGACTGGGT TCTCGGTTCAAGCCTTTTCCAAGCTCGGCGAGTTCCTCAAGCTCTCTGCTGCCGCTGGAGTCATGCTCTGTCTGGAGAATTGGTACTATAGGATTCTGAT ACTGATGACGGGCTACTTGAAAAATGCTACTTTGGCAGTCGATGCACTTTCCATCTGCATGAGCATTAATGGGTTTGAGATCATGATTCCACTAGCGTTT TTTGCAGCCATTGGAGTGAGGGTGGCGAATGAGCTGGGGGCTGGGAACGGGAAAGCAGCAAAGTTCGCAACGGCAGTAGCGGTGGCGCAATCAGCAGTGA TTGGGTTGGTGTTCTGCGTACTGATAATGATACTGAGGGAGAAGATGGCTTTGATCTTCACTTCCAGCGCTGATGTCCTTGCACAAGTTGATAACCTCTC CTTCCTATTGGCCATCACCATTCTTCTTAACAGCGTTCAACCAGTTCTCTCAGGTGTGGCAGTAGGGTCGGGGTGGCAAGCAACAGTAGCATACATAAAC TTGGGGTGCTACTACGTGATTGGCCTCCCGCTTGGGATTCTCATGGGACGGGCTTTCAATTTGGGAGTTGAGGGCATATGGGGAGGCATGATTTTTGGTG GAACTTTCATTCAGACACTGATTTTGGCTGTTATCACCTTCAGATGTGATTGGGACAAAGAGGTAACTAAGTACTAG
AA sequence Show only first row Show all	>Lus10020952 pacid=23177937 polypeptide=Lus10020952 locus=Lus10020952.g ID=Lus10020952.BGIv1.0 annot-version=v1.0 MDQISTADDENDKLSSKLWIETKKLWQIVGPALFSRIASFAMNIITLAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKHYHMLG IYVQRSWIVLFCCCFLLLPLYAFATPVLKWLGQPDDVAEMSGEVALWLIPLHFSFAFQFPLRRFLQCQLKNNVIAWVSLVALLVNILTSWLFMYVWEFGV VGAAIALDVSWWVLVFGMLAYALLGGCPLTWTGFSVQAFSKLGEFLKLSAAAGVMLCLENWYYRILILMTGYLKNATLAVDALSICMSINGFEIMIPLAF FAAIGVRVANELGAGNGKAAKFATAVAVAQSAVIGLVFCVLIMILREKMALIFTSSADVLAQVDNLSFLLAITILLNSVQPVLSGVAVGSGWQATVAYIN LGCYYVIGLPLGILMGRAFNLGVEGIWGGMIFGGTFIQTLILAVITFRCDWDKEVTKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65380			MATE efflux family protein (.1...		Lus10020952 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038178 [exp]	1.4	0.8790
AT3G09760			RING/U-box superfamily protein...		Lus10026501 [exp]	14.8	0.8226
AT2G41640			Glycosyltransferase family 61 ...		Lus10035441 [exp]	19.0	0.8051
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	23.7	0.8166
					Lus10039778 [exp]	30.2	0.7799
					Lus10021100 [exp]	39.6	0.8033
AT3G27880			Protein of unknown function (D...		Lus10014541 [exp]	40.9	0.7652
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	50.2	0.7644
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10018488 [exp]	52.7	0.7653
AT5G46080			Protein kinase superfamily pro...		Lus10025455 [exp]	52.7	0.7962

Compare expression of checked genes

Lus10020952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.