Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26420 120 / 4e-33 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT2G21660 81 / 3e-19 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT4G39260 76 / 5e-18 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT3G53460 72 / 1e-14 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT4G13850 68 / 2e-14 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT2G37220 69 / 1e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G61030 68 / 2e-13 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT1G18630 66 / 3e-13 GR-RBP6 glycine-rich RNA-binding protein 6 (.1) AT5G04280 66 / 1e-12 AtRZ-1c AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT4G24770 65 / 5e-12 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023569 [exp] 77 / 3e-17 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026344 [exp] 74 / 2e-16 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042320 [exp] 74 / 2e-16 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026343 [exp] 74 / 3e-16 AT4G39260 145 / 1e-45 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) Lus10040454 [exp] 75 / 4e-16 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10022551 [exp] 71 / 2e-15 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 71 / 3e-15 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10043158 [exp] 69 / 1e-14 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10017852 [exp] 71 / 2e-14 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G207100 [exp] 116 / 4e-32 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.004G155300 [exp] 82 / 2e-19 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G116400 [exp] 80 / 1e-18 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.010G228700 [exp] 71 / 2e-14 AT5G04280 172 / 7e-52 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.008G033000 [exp] 70 / 4e-14 AT1G60650 172 / 3e-52 AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Potri.015G057400 [exp] 68 / 1e-13 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.001G319900 [exp] 66 / 1e-13 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.017G059000 [exp] 66 / 1e-13 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.012G061600 [exp] 68 / 2e-13 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.001G340800 [exp] 68 / 2e-13 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10020953 pacid=23148968 polypeptide=Lus10020953 locus=Lus10020953.g ID=Lus10020953.BGIv1.0 annot-version=v1.0 ATGATGCTTGGTTGTGTTATGGCTACGGGCGTGAACACTAGTCCACGACAGACGCGGTGGATAGCTGACCACAGGCATGACGTAGAGCTGAAAGATGCAT TTGAAAAGTATGGGAAACTACTTGATGCCAAGGTGGTTGTTGACAAGTTTTCAGGGCGCTCCCGTGGATTTGGGTTTGTTACTTTGGATGAGAAGAAAGC ATTGCAAGAGGCTATCGAGGCTATGAATGGGATAGATCTTGATGGACGAACTATTATAGTTGAGAAAGCCCAACCTAGTCAAGGACGAGATAATGACTTT GATCGTAGTCGTGGCCGCGATCGTGGTGGTGATGGTGGAGGTGGAGTGAGGCGTGGATCTAATGGTGGGGAGTGCTTCAAGTGTGGCAAACCTAGACATT TTGCTAGGGAGTATCCAAGTGAAGGAGAAAGAGGAGGCAGGTATGGTGGCCGGGATGACAGGTATGGAGGTGGAAGTGGTGGTGGGTCTGGGCGCTATGG CCCTGATCGGAATAGTGACAGGTACGGAGGTGGACGTGACAGGGGAGGTGGACGTGACAGGGACGGTGGACGTGACAGGGAAGGTGGATGTGACAGGGAC GGTGGACGTGACAGGGATGGGAGCCGTGGGGGTCAAGGAAATGATCGATATTCTCGCGACCGTTCAGGGCCATATGAACGAAGGACTTCGGGAAAATAG
AA sequence Show only first row Show all	>Lus10020953 pacid=23148968 polypeptide=Lus10020953 locus=Lus10020953.g ID=Lus10020953.BGIv1.0 annot-version=v1.0 MMLGCVMATGVNTSPRQTRWIADHRHDVELKDAFEKYGKLLDAKVVVDKFSGRSRGFGFVTLDEKKALQEAIEAMNGIDLDGRTIIVEKAQPSQGRDNDF DRSRGRDRGGDGGGGVRRGSNGGECFKCGKPRHFAREYPSEGERGGRYGGRDDRYGGGSGGGSGRYGPDRNSDRYGGGRDRGGGRDRDGGRDREGGCDRD GGRDRDGSRGGQGNDRYSRDRSGPYERRTSGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26420		ATRZ-1A	RZ-1A, RNA-binding (RRM/RBD/RN...		Lus10020953 [exp]	0	1
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10034688 [exp]	2.4	0.8902
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10005910 [exp]	3.2	0.8896
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10040519 [exp]	12.0	0.8671
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10040091 [exp]	12.7	0.8637
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	13.2	0.8762
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Lus10027463 [exp]	13.4	0.8413
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10021154 [exp]	14.1	0.8435
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10005458 [exp]	15.5	0.8534
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10015203 [exp]	17.5	0.8705
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10035409 [exp]	18.8	0.8732

Compare expression of checked genes

Lus10020953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.