Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68140 303 / 3e-102 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT4G08460 222 / 3e-71 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT1G77770 198 / 3e-62 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT3G24740 198 / 4e-61 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT4G31410 155 / 5e-45 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G80220 123 / 2e-33 Protein of unknown function (DUF1644) (.1) AT1G15430 122 / 4e-33 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT3G25910 100 / 6e-24 Protein of unknown function (DUF1644) (.1) AT2G26050 89 / 1e-20 Protein of unknown function (DUF1644) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004940 [exp] 560 / 0 AT1G68140 319 / 4e-108 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10025356 [exp] 437 / 1e-156 AT1G68140 282 / 3e-95 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10009772 [exp] 235 / 2e-76 AT4G08460 256 / 3e-85 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10024758 [exp] 230 / 4e-74 AT4G08460 251 / 8e-83 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10022809 [exp] 193 / 3e-59 AT3G24740 351 / 1e-120 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10011876 [exp] 194 / 2e-58 AT3G24740 358 / 5e-122 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10019436 [exp] 178 / 1e-53 AT3G25910 277 / 3e-91 Protein of unknown function (DUF1644) (.1) Lus10043292 [exp] 176 / 8e-53 AT3G25910 282 / 2e-93 Protein of unknown function (DUF1644) (.1) Lus10020151 [exp] 167 / 8e-50 AT4G31410 363 / 1e-126 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G021800 [exp] 398 / 3e-139 AT1G68140 315 / 2e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.001G208800 [exp] 395 / 1e-138 AT1G68140 312 / 6e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.002G088700 [exp] 257 / 1e-84 AT4G08460 245 / 2e-80 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.005G172300 [exp] 235 / 6e-76 AT4G08460 219 / 2e-70 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.006G154300 [exp] 181 / 2e-54 AT3G25910 152 / 8e-43 Protein of unknown function (DUF1644) (.1) Potri.018G070500 [exp] 178 / 1e-53 AT3G25910 246 / 2e-79 Protein of unknown function (DUF1644) (.1) Potri.002G216600 [exp] 173 / 2e-51 AT3G24740 334 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.003G060800 [exp] 167 / 4e-48 AT3G25910 188 / 3e-55 Protein of unknown function (DUF1644) (.1) Potri.018G006400 [exp] 164 / 4e-48 AT4G31410 331 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.006G275400 [exp] 162 / 7e-48 AT4G31410 311 / 4e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF07800 [flax] [poplar] DUF1644 Protein of unknown function (DUF1644)
Representative CDS sequence Show only first row Show all	>Lus10020957 pacid=23148973 polypeptide=Lus10020957 locus=Lus10020957.g ID=Lus10020957.BGIv1.0 annot-version=v1.0 ATGGCCAGATCACGAAGAAGAACTTCTTTCAGACAGTATAGGATGGCTCCTTACCAATTGCCAACATGTGACAGGCACATGCCAGAAGAATTATGTCCAA CTAAAGGCTCCAGATGCTTAGATAAGAATGATTGGGAACATGCAACTTGCTCAGTGTGCATGGAGTGTCCACATAATGCAGTTCTGTTGCTCTGCTCCTC CCATGATAAGGGTTGCCGTCCCTATATGTGTGGTACTAGTTTCCGTTACTCCAATTGTCTTGACCAATACAAGAAGGCATACACGAAAGTCATCTCCTCG AGCGGGAATGGTGATAATCCATTTTCCGTATCAGACTCGAGTTGGCATGTTGAGAAGTGTGAAGTCTCAGAACTTGCTTGCCCTCTTTGCAGAGGCCAAG TGAAAGGGTGGACTGTGGTCGAGCCTGCACGAGAATATCTGAATGATAAGACAAGAAGCTGCATGCAAGATGAATGCTCATTTGTTGGAACTTACAAAGA ATTAAGAAAGCACATGAAGGGGGTTCATCCTTGTGCAAGGCCACGTGAAACTGATCCTACACTGGAACAGAAATGGCGAAGGCTGGAAGGTGAGCGGGAG CATGATGATGTGATCAGCACAATACGGTCCACAATGCCTGGATCATTGGTCTTTGGGGATTATGTGATTGAGGGAAACCATCAGGATCTTGATAGTGATG ATGAGGATAGTGCTTTTGAAGCAGATGGGATAGAAAGGAGCGGAGGGTTTCCAGGTTTGGATAGGAACTTTATGAATGTCTTCCTTCTGTTGCATGCCTT TGGGTCATCAGGTGATGAGTTTAGCCGACGGATTAGACAGCCAGAAGAGGGAGGTAGTGGTGGGGCGATGCGACACACGTCTCCAGGTGGTGGGGTGGGG TTCTTTTGTGATTGGCATCCTCTGATGAAGAAGTAG
AA sequence Show only first row Show all	>Lus10020957 pacid=23148973 polypeptide=Lus10020957 locus=Lus10020957.g ID=Lus10020957.BGIv1.0 annot-version=v1.0 MARSRRRTSFRQYRMAPYQLPTCDRHMPEELCPTKGSRCLDKNDWEHATCSVCMECPHNAVLLLCSSHDKGCRPYMCGTSFRYSNCLDQYKKAYTKVISS SGNGDNPFSVSDSSWHVEKCEVSELACPLCRGQVKGWTVVEPAREYLNDKTRSCMQDECSFVGTYKELRKHMKGVHPCARPRETDPTLEQKWRRLEGERE HDDVISTIRSTMPGSLVFGDYVIEGNHQDLDSDDEDSAFEADGIERSGGFPGLDRNFMNVFLLLHAFGSSGDEFSRRIRQPEEGGSGGAMRHTSPGGGVG FFCDWHPLMKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68140			Protein of unknown function (D...		Lus10020957 [exp]	0	1
AT3G53390			Transducin/WD40 repeat-like su...		Lus10026500 [exp]	3.0	0.8257
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10007370 [exp]	5.3	0.8470
AT4G17650			Polyketide cyclase / dehydrase...		Lus10042651 [exp]	8.5	0.7960
AT5G18200			UTP:galactose-1-phosphate urid...		Lus10040803 [exp]	10.7	0.8062
AT3G10860			Cytochrome b-c1 complex, subun...		Lus10019118 [exp]	12.3	0.8021
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10016538 [exp]	13.3	0.8273
AT1G25550	GARP		myb-like transcription factor ...		Lus10034280 [exp]	16.4	0.7284
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10020241 [exp]	23.9	0.7829
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10030820 [exp]	27.1	0.8209
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10043440 [exp]	28.0	0.7375

Compare expression of checked genes

Lus10020957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.