Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13810 551 / 0 EDTS5, ALD1 eds two suppressor 5, AGD2-like defense response protein 1 (.1) AT4G33680 533 / 0 AGD2 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 68 / 3e-12 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT1G80360 67 / 7e-12 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT5G53970 57 / 7e-09 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT1G77670 54 / 2e-07 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G72330 44 / 0.0002 ALAAT2 alanine aminotransferase 2 (.1.2.3) AT5G11520 42 / 0.0006 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035646 [exp] 543 / 0 AT4G33680 723 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10010748 [exp] 536 / 0 AT4G33680 724 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000205 [exp] 89 / 3e-21 AT4G33680 120 / 5e-33 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10023117 [exp] 68 / 3e-12 AT1G80360 593 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10032388 [exp] 67 / 6e-12 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10023080 [exp] 67 / 1e-11 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10004089 [exp] 59 / 2e-09 AT1G77670 685 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10014710 [exp] 59 / 3e-09 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10011479 [exp] 57 / 7e-09 AT1G80360 497 / 2e-177 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G013200 [exp] 619 / 0 AT2G13810 644 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.005G115800 [exp] 617 / 0 AT2G13810 601 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.002G091500 [exp] 567 / 0 AT2G13810 581 / 0.0 eds two suppressor 5, AGD2-like defense response protein 1 (.1) Potri.009G082100 [exp] 536 / 0 AT4G33680 736 / 0.0 ABERRANT GROWTH AND DEATH 2, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G177000 [exp] 67 / 4e-12 AT1G80360 573 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G088426 [exp] 65 / 3e-11 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G175400 [exp] 64 / 6e-11 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G079200 [exp] 61 / 9e-10 AT2G22250 649 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.002G086000 [exp] 56 / 2e-08 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G124100 [exp] 52 / 5e-07 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10020959 pacid=23148980 polypeptide=Lus10020959 locus=Lus10020959.g ID=Lus10020959.BGIv1.0 annot-version=v1.0 ATGATGCTAGTTTACAACACAAAAGTGCCTCGCAATGTCAACTTGGAGAAGCTACCAAAGGGCTATCTATTCCCTGAGATAGCCTTGCGACAGATTCAAC ACCTTGAAAAATTCCCGGATGCAAAGTTGATAAGCCTCGGGATAGGTGATACAACAGAGCCGATACCAGACATTGTAACATCAAGAATGGCCAATTTTAC TAGCGGCCTTTCAACACTAGAAGGATACAAAGGGTACGGAGCTGAGCAAGGAAATACGGAACTCAGAAAAGCCATTGTAGAAACATTTTACAAAGACGTA AACGTCAAAGATTCTGAAGTTTTCGTATCTGATGGTGCACAGGGTGACATTGCTCGCCTTCAGCTGCTTCTTGGTTCCCAAGTGACAAGAGCTGTCCAAG ATCCAACATTTCCGGGTTATATAGACACAAGCGTTATAATCGGCGAAGCTGGTGACTTGGACAATGAAACTGGAAGATACAATGGGATTGAGTACCTGAA ATGTGGACCTGAAAACAAGTTCTTCCCTGATTTGATAAGAAGAACAACAAGCGCAGATGTAATCTTCTTTTGCTCCCCAAATAACCCCACAGGTCATGCA GCAACAAGGCAACAGTTGGAACAGCTTGTCAATTTTGCTAAAAACAGTGGATCCATTATAGTATTCGACTCTGCGTATGCTTCTTACATTACAGACGATT CTCCTCGATCCATCTTTGAAATTCCTGGAGCTAAAGAGGTTGCAATTGAGATATCTTCTTTCTCAAAGTTTGCTGGATTCACTGGAGTTCGTCTTGGCTG GACAGTTGTTCCAACAGAACTCTGCTTCTCCAATGGTTTCCCTGTGATACATGACTTCAATCGTGTAGTATGCACCTGCTTCAATGGAGCCTCAAATATA GCTCAGGCTGGTGGACTTGAATGTCTTTCTCCTCAAGGTTTCAAGACTGTGCAGAGCAGGCTGAAGTACTACCAGGAGAATGCGAATATACTTGTTAATG CTCTTGCTTCTCTTAACCTCAAGGCATATGGAGGAGTAAATGCACCTTATGTGTGGGTTCATTTTCCAGGCATGAAATCATGGGACATGTTTGATACCAT CCTTGACAAGGCTCACATTATAACAGTTCCAGGTTCTGGATTTGGTCCAGGAGGCGAAGAGTTTGTCAGAATCAGCGCTTTTGGCCATAGACAAAGCATC CACGAAGCCGCTAGAAGATTAAAGGTTCTCTTCTCCTAG
AA sequence Show only first row Show all	>Lus10020959 pacid=23148980 polypeptide=Lus10020959 locus=Lus10020959.g ID=Lus10020959.BGIv1.0 annot-version=v1.0 MMLVYNTKVPRNVNLEKLPKGYLFPEIALRQIQHLEKFPDAKLISLGIGDTTEPIPDIVTSRMANFTSGLSTLEGYKGYGAEQGNTELRKAIVETFYKDV NVKDSEVFVSDGAQGDIARLQLLLGSQVTRAVQDPTFPGYIDTSVIIGEAGDLDNETGRYNGIEYLKCGPENKFFPDLIRRTTSADVIFFCSPNNPTGHA ATRQQLEQLVNFAKNSGSIIVFDSAYASYITDDSPRSIFEIPGAKEVAIEISSFSKFAGFTGVRLGWTVVPTELCFSNGFPVIHDFNRVVCTCFNGASNI AQAGGLECLSPQGFKTVQSRLKYYQENANILVNALASLNLKAYGGVNAPYVWVHFPGMKSWDMFDTILDKAHIITVPGSGFGPGGEEFVRISAFGHRQSI HEAARRLKVLFS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13810		EDTS5, ALD1	eds two suppressor 5, AGD2-lik...		Lus10020959 [exp]	0	1
AT3G13690			Protein kinase protein with ad...		Lus10030950 [exp]	3.7	0.8584
					Lus10033847 [exp]	8.4	0.8855
					Lus10018997 [exp]	11.6	0.8752
AT1G76040		CPK29	calcium-dependent protein kina...		Lus10017251 [exp]	15.6	0.8714
					Lus10030151 [exp]	19.0	0.8457
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026906 [exp]	20.9	0.8215
AT1G55200			Protein kinase protein with ad...		Lus10040097 [exp]	21.2	0.8249
AT1G23090		SULTR3;3, AST91	sulfate transporter 91 (.1)		Lus10034603 [exp]	21.9	0.8311
AT5G64240		AtMCP1a, ATMC3	metacaspase 1a, metacaspase 3 ...		Lus10035630 [exp]	22.3	0.8633
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10028175 [exp]	23.1	0.8461

Compare expression of checked genes

Lus10020959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.