Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22040 471 / 6e-164 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 140 / 7e-37 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 102 / 1e-23 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 95 / 5e-21 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 87 / 3e-18 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G21950 85 / 1e-17 SKIP6 SKP1 interacting partner 6 (.1) AT3G61350 84 / 2e-17 SKIP4 SKP1 interacting partner 4 (.1) AT3G27150 84 / 3e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 82 / 9e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44130 80 / 5e-16 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025357 [exp] 872 / 0 AT1G22040 497 / 6e-174 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 147 / 3e-39 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 145 / 2e-38 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 105 / 2e-24 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10022061 [exp] 102 / 6e-24 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10028121 [exp] 102 / 1e-23 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 97 / 2e-21 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10023608 [exp] 92 / 5e-20 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 87 / 2e-18 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G170000 [exp] 517 / 0 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 513 / 2e-180 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 150 / 2e-40 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 149 / 7e-40 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 114 / 2e-27 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 98 / 4e-22 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.007G081100 [exp] 96 / 1e-21 AT2G21950 390 / 3e-135 SKP1 interacting partner 6 (.1) Potri.014G083200 [exp] 94 / 4e-21 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1) Potri.002G050600 [exp] 94 / 6e-21 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G059200 [exp] 93 / 2e-20 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10020960 pacid=23148962 polypeptide=Lus10020960 locus=Lus10020960.g ID=Lus10020960.BGIv1.0 annot-version=v1.0 ATGGGCGCAATTTTGAGCTTAAATGGTTCTGGTTCGAGTTCTGGGGTCCCTTTGGAGAAATCACCACGTGTTGGAACTTGTAAGAGACAAAGGGTTTCAT CAAATTCTTGTGAGGGAAACCCTCGACTCATTCCCAGTCTTCCTGATGAGATAACATTGGAGATACTTGCTAGGATTCCTAGGGTCCATTACTTGAAAAT GAAGCTAGTCTCACGGGCGTGGAAGTCAACTATCCTTCATTCTCTACTCTTTGATGTGAGAAAGCAACTCGGAGCAACAGAAGAGTGGCTATACTTACTA ACAAAGGTTGAAGATGACAAGCTGCTTTGGTATGCTTTGGACCCTCTGAACAATATATGGCAGAGGTTGCCAGCTATACCAAGTGCTGTTTACGGTGATG AAGCGAAGAAGGGGCTGGTTGGTCCTCGGGTTTGGAATATGGTAGGGTCCGGTATAAAAGTTGCTGATATGGTAAGGAGCTGGCTTGGAAGGAAGGGTGC ACCTGAAAGAATGCCCTTTTGTGGTTGTGCTGTTGGAGTTGTAGATGGTTGTCTCTATGTTCTTGGAGGATTCTCAAAAGGTTCAGCGATGAGATGTGTG TGGAAGTATGATCCTATAGTAAATGAGTGGAATGAGGTCAGTCCAATGACTAGGGAGAGAGCATATTCTAAGACCTGTGTGTTAAACAATAAACTATATG TTGTTGGAGGAGTTAATGGAGGTCGTGATGGATTGATGCCACTTCAATCTGCTGAAGTATATGATCCTAAAACAGGTTTATGGTCAAGACTTCCAAGCAT GCCTTTCCTGAAAGCTCAGACCATACCCACAGCATTTCTGGCGGATCTGCTCAAGCCTATAGCAACAGGAGTGACTACGTACAGAGGAAAACTGTATGTG GCACAGAGCTTATACTGCTGGCCGTTTGTTGTCGATGTTGGTGGTGAGGTTTATGATCCGGTGACAAATGATTGGATTGAAATGCCATCTGGTATGGGTG ATGGTTGGCCTCCAAGGCAAGCCGGAAGGAAACTGAGTGTGACAATTGAAGGGGAGTTGTATGCTCTGGACCCATCTGGCTCTGTTGATGGTACCAGTAC TAAAATCCAGGTCTATGACTATCATGAAGATGCGTGGAAGGTTGTTCTCAGAGACGTTCCTATTTCCAGTAATGCTGATTCAGAATCACACCATCTACTT ACTGGTTTACTTGGGAAGCTCCATGTCGTCACTAAAGATGCAAACTCTAACATCGCTGTTCTACAGGCAGGAGGAATTCACAACTGTGAGGAGGAATCTG TTGCTTCAGAGTTGGCACCAGAAACAGAGAATTGGAAAATCATTGCATCCAGAAATGCTGCTTCTTCTGAACTAGTCAACTGCGTGACTCTTGATATCTG A
AA sequence Show only first row Show all	>Lus10020960 pacid=23148962 polypeptide=Lus10020960 locus=Lus10020960.g ID=Lus10020960.BGIv1.0 annot-version=v1.0 MGAILSLNGSGSSSGVPLEKSPRVGTCKRQRVSSNSCEGNPRLIPSLPDEITLEILARIPRVHYLKMKLVSRAWKSTILHSLLFDVRKQLGATEEWLYLL TKVEDDKLLWYALDPLNNIWQRLPAIPSAVYGDEAKKGLVGPRVWNMVGSGIKVADMVRSWLGRKGAPERMPFCGCAVGVVDGCLYVLGGFSKGSAMRCV WKYDPIVNEWNEVSPMTRERAYSKTCVLNNKLYVVGGVNGGRDGLMPLQSAEVYDPKTGLWSRLPSMPFLKAQTIPTAFLADLLKPIATGVTTYRGKLYV AQSLYCWPFVVDVGGEVYDPVTNDWIEMPSGMGDGWPPRQAGRKLSVTIEGELYALDPSGSVDGTSTKIQVYDYHEDAWKVVLRDVPISSNADSESHHLL TGLLGKLHVVTKDANSNIAVLQAGGIHNCEEESVASELAPETENWKIIASRNAASSELVNCVTLDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22040			Galactose oxidase/kelch repeat...		Lus10020960 [exp]	0	1
AT4G25670			unknown protein		Lus10027511 [exp]	2.0	0.9114
AT5G03990			unknown protein		Lus10016362 [exp]	2.6	0.9025
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	2.8	0.9253
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	3.5	0.9101
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	4.9	0.9072
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	6.0	0.9036
AT3G61180			RING/U-box superfamily protein...		Lus10029582 [exp]	6.3	0.9009
AT1G22730			MA3 domain-containing protein ...		Lus10011324 [exp]	6.5	0.8903
AT4G25670			unknown protein		Lus10039276 [exp]	7.1	0.9040
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037735 [exp]	7.4	0.8942

Compare expression of checked genes

Lus10020960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.