Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031047 [exp] 281 / 7e-89 AT3G57280 132 / 6e-37 Transmembrane proteins 14C (.1) Lus10003899 [exp] 210 / 1e-62 ND / Lus10002975 [exp] 132 / 3e-33 ND / Lus10006099 [exp] 125 / 7e-33 ND / Lus10012614 [exp] 111 / 3e-28 ND / Lus10020595 [exp] 115 / 4e-28 ND / Lus10011759 [exp] 96 / 8e-21 ND / Lus10039373 [exp] 84 / 8e-19 ND / Lus10029540 [exp] 83 / 6e-17 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020961 pacid=23148953 polypeptide=Lus10020961 locus=Lus10020961.g ID=Lus10020961.BGIv1.0 annot-version=v1.0 ATGGAAACTTCGAAGGGTTGGTTTGGGTCCGATTTTAAACTGGTTGTGCGGCAGGGTTCCAAGATGCATTTCGTATTCTTGGAGTTAGTTCATGTTGAGT GGCTGGCCGGAGTTATTCAAGTGGCTGCCGGAAAGAAGTGGGTCATCCCGATTGACTGTGAACTGAAAACTTTGAAACGCACGATTTCAATCACTAGGTT CCACTTGCAGGGGAGACCTGTCCTGAAAATCTATGAAAGATGTGGGAATGGTAAAATATTTTTTGTGATCATACCTTGTGAGAAGAACTCCAATGGGTGG AATGCGTTTTTGAGGATGTTGCGGGATCGAGGCCGTTTGCCTCCGGCGCCTCCAGTAGCCAGGTTAGGAAGCCGATCTTTCGCAGAGGTGGTGTCCTGCA AAACTATGCCACTAGCAGGGCGTTGTAATAGGTGTGAAATTGGGGACGCAATGGGGGTGAAAGTGTCGGAGGATGGAGTGAAAGAAAGACTCAAACATTT GGAACGTTGCCTGGTGGTTCGATTCGAGACTGTGAAGAGTATTGACTGGGAAGCTTTCAGGAGTTGGGCTAGTAAGAATTGGGGGATCAATCGAGAGGTT TTAATTCAGAGTGTGGGGGATGGTTTATGGATGGTGACCTGCAATGGGAAGGAAGAAGTTGAAAGGATCTTGGCGCTTAAGCGGTGGAGGTTTGGTGATA TACCCTTAAAGTTTGATGGATGGATAAAGGAGGCCGGAAGATCCGGAGTGTTGTTGGAGTCGGATGTGGTGTGGGTATTGATTCGCGGTATTCCTTTACA CTTACGCTCGCCGGACCTCGTGAGATCCCTAGGCGATGTCTGTGGAGGTTTTTTGGAGTCCGAAGAAGTGAGGGATCTAACTTCGGTGAGAATCAAGGTG CAGCTAAAAGGAACATTACCTGATTCAATCCCAATCTGCTATGGTGAAGAAATATATCCTGTTAAATTGGATTTTGTCTCAGCTCCGATTCCGGTAAGCT TCGGGGGAAAGTCGTCTCGACAAAGAAAATGGAAGGGGAAGGCCAGGATGTTTTCAGATCGGGCGGACGCTGTCTGTTCCTCGAATGGAGCGCTGATGGG AACGCGGTTTGCTGTGCCGGTGGGTATTGGGAGTCCCAAGAAGAACTCGGTTCTCGCAGCAGAGATAGAGTCAGGGATTGAGCTTTCGACTGGTGAGGAT GACTCCTTGATTGTTGTGCCGGAACAGAGTATAGATGTGAGAGGTCAGGTTGGAGACGACGTGGCCGTGGAGATGGTATCGACAGAGGGGAGAGAGAATA TGGCGATTTCGTTAGAGGGGAGAGAGAGGGTGTTTATTTCGACTGTGGGAGAGAGAAAATTGATGTTTTCGGCAAAAAAGAGAGAGATAAGTGGTCTGGT TGGTTTACAGTTAAATTTGGACGGAAATTCAATAGAAAATATTGAGTCTTCTACTTTTATTTCAGCTGGTGAGGCTTTTGGAGGGGTAGTTGGGCCTTTG GTCAAGGAAAGCTTGCCTGATGGACCGGTGGGCCTTCCATTCAAGGAATGGGGGTGGAAGTCTAATGGTGTTGAATGGTTAAGTCCATTTAATTTAAAGT TTGGGATGACAATAAACAGATTTGGGCCTTGGAATCCGTTAGACTTAATGCTGTTATTTTCTGTTGAAGTGGTCAAGGGAGGAGTATTGCCTTGTAAGCA AGGGTTATGTTATGAAGAGGGAGACAACCTTAGCATAGAAAGTGTGGATCTCCTAACAAAGTCCAGCGAAGTAGTGCAAAGTGAGAAGGGGGTTGGCTTC AATGATTTCAAATTGATAGAGGCAGTGGAAGCGGTAGCTTCCTGGATTGGTCTGGAAATGGATGGATCTCGTGAAAAAGGTGTGGCTGTCGTGATCCAAG CTTGTACAAAAATCAAACAGTGTCAGGCGAACCTTGAGCTTCATCCTCGCTCCAGTACAGAATTGAAAAAACTGGGAACAAGCTTGGATCAAGTTTTAAA TTGGAATGGTAGAAGTCGACGGGAAAGGTATCCTACGAAACCCCCTTCATCTTATGAATTTTAA
AA sequence Show only first row Show all	>Lus10020961 pacid=23148953 polypeptide=Lus10020961 locus=Lus10020961.g ID=Lus10020961.BGIv1.0 annot-version=v1.0 METSKGWFGSDFKLVVRQGSKMHFVFLELVHVEWLAGVIQVAAGKKWVIPIDCELKTLKRTISITRFHLQGRPVLKIYERCGNGKIFFVIIPCEKNSNGW NAFLRMLRDRGRLPPAPPVARLGSRSFAEVVSCKTMPLAGRCNRCEIGDAMGVKVSEDGVKERLKHLERCLVVRFETVKSIDWEAFRSWASKNWGINREV LIQSVGDGLWMVTCNGKEEVERILALKRWRFGDIPLKFDGWIKEAGRSGVLLESDVVWVLIRGIPLHLRSPDLVRSLGDVCGGFLESEEVRDLTSVRIKV QLKGTLPDSIPICYGEEIYPVKLDFVSAPIPVSFGGKSSRQRKWKGKARMFSDRADAVCSSNGALMGTRFAVPVGIGSPKKNSVLAAEIESGIELSTGED DSLIVVPEQSIDVRGQVGDDVAVEMVSTEGRENMAISLEGRERVFISTVGERKLMFSAKKREISGLVGLQLNLDGNSIENIESSTFISAGEAFGGVVGPL VKESLPDGPVGLPFKEWGWKSNGVEWLSPFNLKFGMTINRFGPWNPLDLMLLFSVEVVKGGVLPCKQGLCYEEGDNLSIESVDLLTKSSEVVQSEKGVGF NDFKLIEAVEAVASWIGLEMDGSREKGVAVVIQACTKIKQCQANLELHPRSSTELKKLGTSLDQVLNWNGRSRRERYPTKPPSSYEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020961 [exp]	0	1
AT5G66650			Protein of unknown function (D...		Lus10005312 [exp]	1.7	0.7879
					Lus10007785 [exp]	2.4	0.7614
					Lus10034269 [exp]	8.7	0.7403
AT2G37470			Histone superfamily protein (....		Lus10006484 [exp]	11.7	0.7014
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10030311 [exp]	16.0	0.7285
					Lus10016642 [exp]	17.9	0.6700
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	17.9	0.7191
AT5G38700			unknown protein		Lus10010019 [exp]	36.0	0.6730
					Lus10024547 [exp]	43.5	0.6711
					Lus10042417 [exp]	54.6	0.6796

Compare expression of checked genes

Lus10020961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.