Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33430 937 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT1G34210 899 / 0 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT1G71830 884 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT2G13790 850 / 0 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 794 / 0 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT5G10290 562 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G60800 556 / 0 NIK3 NSP-interacting kinase 3 (.1) AT5G16000 548 / 0 NIK1 NSP-interacting kinase 1 (.1) AT3G25560 520 / 1e-178 NIK2 NSP-interacting kinase 2 (.1.2.3) AT2G23950 506 / 4e-173 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006057 [exp] 676 / 0 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10028716 [exp] 673 / 0 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10006056 [exp] 617 / 0 AT1G71830 731 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10000629 [exp] 566 / 0 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10025358 [exp] 566 / 0 AT4G33430 500 / 2e-176 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10030591 [exp] 558 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10034350 [exp] 557 / 0 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10030898 [exp] 556 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10019145 [exp] 547 / 0 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G206700 [exp] 1004 / 0 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.003G023000 [exp] 989 / 0 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.019G087700 [exp] 894 / 0 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.013G117200 [exp] 891 / 0 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 876 / 0 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 873 / 0 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.007G094500 [exp] 583 / 0 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.010G043200 [exp] 569 / 0 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.008G188800 [exp] 569 / 0 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.004G108200 [exp] 569 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020962 pacid=23148958 polypeptide=Lus10020962 locus=Lus10020962.g ID=Lus10020962.BGIv1.0 annot-version=v1.0 ATGGAGGGGCCGACTGGTGCGATCTGGCACTCCACGTTTTGTCTATTGATTTTGCTAGTTTACAGAGTTACATCCAACTCCGAAGGAGACGCCTTGAATG CATTGAAGACAAATTTGGTTGATCCTAATAATGTTCTACAAAGTTGGGATCCTACTCTTGTCAATCCGTGTACTTGGTTTCATGTTACCTGCAGCAGCGA AAATAGTGTCACCCGAGTTGACCTTGGAAATGCAAATCTAACTGGTCAACTGGTTCCGCAGCTTGGTCAGCTTCCAAACTTGCAGTACTTGGAACTTTAC AGTAATAATTTAAGCGGCAGGATCCCAGAAGAGCTGGGGAATTTGTCAGCACTGGTGAGCTTGGATCTTTATCTGAACAACTTGACTGGTACAATTCCAG TGACACTGGGGAAGCTCCAAAAACTACGTTTCCTGCGTCTCAACAACAACTCATTGTCAGGAACCATTCCTGTGACCTTGACTACAGTTATGTCCTTGCA AGTCCTGGATCTTTCAAACAATAAACTAAACGGGGATATTCCTGTTAATGGTTCTTTCTCTCTGTTTACACCTATAAGTTTTGCCAATAATAAACTGAAC ATACCTCCAGTTTCTCCACCTCCTCCCCTTCCACCATCAGCACCAACTACTTCTAATGGAAACAGTGCCACTGGAGCTATTGCTGGGGGTGTTGCTGCTG GTGCTGCTTTATTGTTTGCTGCGCCGGCGATTGCCCTTGCTTACTGGCGGCGAAGGAAACCACAAGATCTCTTCTTTGATGTACCTGCTGAAGAAGATCC TGAAGTCCATCTTGGACAACTGAAAAGGTTCTCTTTACGTGAACTGCAAGTTGCCACAGATAATTTTAGCAACAAAAACATATTGGGTAGGGGTGGATTT GGTAAGGTATATAAAGGACGGTTGGCTGACGGCACATTAGTAGCTGTTAAAAGGTTGAAGGAGGAGCGTACACAAGGTGGTGAGCTGCAGTTCCAAACAG AAGTTGAAATGATAAGCATGGCTGTGCATCGGAACTTGCTTCGACTACGCGGCTTCTGTATGACTCCAACTGAGAGAGTACTTGTGTATCCCTATATGGC AAATGGAAGTGTTGCTTCCTGTTTGAGAGAGCGTGTGGAATCACAATCTCCGCTAAACTGGCCAGTAAGGAGGACAATTGCATTAGGTGCTGCACGTGGA CTGGCTTATTTGCATGATCATTGTGATCCCAAGATTATCCATAGGGATGTGAAGGCTGCAAATATATTGTTGGATGAGGACTTTGAAGCAGTAGTTGGAG ACTTTGGGTTGGCTAAACTGATGGACTACAAGGATACACATGTGACAACTGCTGTGCGTGGCACAATTGGCCATATAGCTCCAGAGTACCTATCAACAGG AAAGTCATCTGAGAAGACTGATGTTTTTGGATACGGTGTTATGCTTCTTGAGCTCATTACTGGACAGAGGGCCTTTGATCTTGCTAGGCTTGCTAATGAT GATGATGTTATGTTACTTGATTGGGTGAAAGGACTGCTCAAGGACAAGAAGTTGGAGACATTGGTAGATGGAGATCTACAAGCTAATTACATTGACGAAG AGGTAGAGCAACTGATCCAGGTGGCTCTACTGTGCACACAAAGCTCACCAATGGAACGTCCTAAGATGTCGGAGGTTGTGAGAATGCTAGAAGGAGATGG TTTGGCGGAGAGATGGGAAGAGTGGCAGAAAGAAGAAATGTTTAGGCAAGATTACAACCATAACCACCATCCTAACAGCAACTGGATCGTCGATTCAACC TCCCATATTCCTCCAGATGAGCTCTCTGGTCCTAGGTGA
AA sequence Show only first row Show all	>Lus10020962 pacid=23148958 polypeptide=Lus10020962 locus=Lus10020962.g ID=Lus10020962.BGIv1.0 annot-version=v1.0 MEGPTGAIWHSTFCLLILLVYRVTSNSEGDALNALKTNLVDPNNVLQSWDPTLVNPCTWFHVTCSSENSVTRVDLGNANLTGQLVPQLGQLPNLQYLELY SNNLSGRIPEELGNLSALVSLDLYLNNLTGTIPVTLGKLQKLRFLRLNNNSLSGTIPVTLTTVMSLQVLDLSNNKLNGDIPVNGSFSLFTPISFANNKLN IPPVSPPPPLPPSAPTTSNGNSATGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDLFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKNILGRGGF GKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERVLVYPYMANGSVASCLRERVESQSPLNWPVRRTIALGAARG LAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLAND DDVMLLDWVKGLLKDKKLETLVDGDLQANYIDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQKEEMFRQDYNHNHHPNSNWIVDST SHIPPDELSGPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	0	1
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	1.0	0.9685
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	2.4	0.9487
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	2.4	0.9561
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	2.6	0.9227
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	4.0	0.9372
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	5.2	0.9225
AT3G22260			Cysteine proteinases superfami...		Lus10010459 [exp]	6.5	0.9050
AT1G60995			unknown protein		Lus10033791 [exp]	7.5	0.9163
AT1G11340			S-locus lectin protein kinase ...		Lus10025512 [exp]	10.1	0.9103
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10041121 [exp]	12.7	0.9018

Compare expression of checked genes

Lus10020962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.