Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64570 1144 / 0 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G09730 1068 / 0 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT3G19620 863 / 0 Glycosyl hydrolase family protein (.1) AT5G49360 851 / 0 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT1G02640 830 / 0 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G10560 728 / 0 Glycosyl hydrolase family protein (.1) AT1G78060 696 / 0 Glycosyl hydrolase family protein (.1) AT5G09700 655 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 146 / 1e-36 Glycosyl hydrolase family protein (.1) AT3G47050 139 / 2e-34 Glycosyl hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010015 [exp] 839 / 0 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10022374 [exp] 740 / 0 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10016858 [exp] 736 / 0 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10019099 [exp] 718 / 0 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10004271 [exp] 704 / 0 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10007775 [exp] 492 / 1e-166 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019240 [exp] 261 / 8e-78 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10037728 [exp] 157 / 2e-44 AT5G49360 177 / 1e-52 beta-xylosidase 1 (.1) Lus10010657 [exp] 143 / 2e-35 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G206800 [exp] 1223 / 0 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.003G022900 [exp] 1210 / 0 AT5G64570 1138 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.002G197200 [exp] 871 / 0 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.014G122200 [exp] 865 / 0 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.010G141400 [exp] 864 / 0 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.008G108100 [exp] 844 / 0 AT5G49360 1104 / 0.0 beta-xylosidase 1 (.1) Potri.001G294700 [exp] 813 / 0 AT3G19620 1080 / 0.0 Glycosyl hydrolase family protein (.1) Potri.007G114300 [exp] 761 / 0 AT3G19620 776 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168500 [exp] 733 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G094000 [exp] 728 / 0 AT1G78060 1077 / 0.0 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10020966 pacid=23148976 polypeptide=Lus10020966 locus=Lus10020966.g ID=Lus10020966.BGIv1.0 annot-version=v1.0 ATGGCGGCCCATCCTCCGTTTCCAAACAGAGGATTCCGCAGTAGAGCAGTAGTCTTCTTGTTTCTCATCCTTGTTGTGATCAACGGGTCAGTAGTGGTGG TCCGCGCCCAGAACCCGGTGTTCGCCTGCGATGTGGCTAAGACGCCGTCCCTTGCAAGTCTGGGATTCTGCAATGGGTCAATCTCGGTGACAGAGCGGGT TGCGGACCTTGTGGGAAGGCTGACGCTGCCGGAGAAAATAACGTTCCTGGTGAATAGCGCCGGCAACGTAGACCGGCTTGGGATACCAAAGTATGAGTGG TGGTCGGAGGCCCTACACGGCGTGTCGTATGTTGGTCCAGGTACCCACTTTTCGAATGTGGTCCCCGGTGCCACTAGTTTCCCTCAGGTCATCCTCACTG CCGCCTCTTTCAACACTTCCCTTTTCCAAGCCATTGGCAAGGTGGTATCAACGGAAGCAAGAGCAATGCACAATGTAGGATTAGCAGGATTAACATTTTG GTCTCCCAACATTAACATATTACGAGACCCAAGATGGGGAAGAGCACAAGAGACTCCGGGTGAAGACCCCTTGCTCACCAGCAAATACGCCACTGCCTAT GTTAAGGGTCTACAGCAGCGCGATGACGGCGATGAAGACCGCCTTAAAGTCGCTGCCTGCTGCAAACATTACACCGCCTACGATGTCGACAACTGGAAAG GGGTCGATCGCTACCATTTCAACGCTATCGTTACGAAGCAAGACATGGATGACACATTCCAGCCTCCATTCAAGAGCTGTGTGACGGAGGGTAATGTAGC CAGCGTGATGTGCTCTTACAACCAGGTGAACGGGGTTCCAACATGTGCCGATCCAGACCTCCTAGCGGGCGTAATTCGAGGCCAGTGGAAGTTGAATGGG TACATTGTGTCGGATTGTGATTCTCTAGACGTGTACTACAAATCCCAACACTATACGAAAACACCGGAAGAGGCTGCAGCAAAAGCCATATTGGCAGGAT TGGATTTGAACTGTGGATCCTTCCTAGGACAACACACGGAGGCAGCAGTTATAGCAGGGCTGGTGGATGAATCGGCTATTAACAATGCCATATCCAACAA TTTCGCCACATTAATGAGACTTGGATTCTTTGATGGGGATCCAAGGACTCAACTTTACGGCAAGTTAGGTCCTAAAGATGTTTGCACAGAGGAGAACCAA GAACTGGCCAGAGAAGCTGCTAGGCAAGGCATAGTTCTCCTCAAGAACAACGCCGCTTCACTTCCCCTGTCTCCCACCACCATCAAAAATTTGGCTGTAA TTGGACCAAATGCCAATGTCACCAAAACCATGATCGGCAACTATGAAGGGACTCCATGCAAGTACACAACACCTCTACAGGGGCTAAGCGCATCGGTGGC CACAACATATGTAGCAGGGTGTCAGAACGTAGCCTGTGGGACGGCTGAGTTAGATGAGGCAAAGAAAGCAGCGTCTTCTGCAGACGCAACTATCCTTGTG ATGGGGACAGATCTGTCAATTGAAGCAGAGAGCTTGGACAGAACAGACCTCACTCTACCAGGACAGCAACAGGATTTGGTAACTCAAGTGGCAAGCGTCT CCAAAGGACCCGTGATTCTTGTCATCATGTCAGGGGGAGGCATTGATGTCAGTTTTGCCAAGTCTAGTGACCAAATCTCAACCATCCTTTGGGTTGGTTT CCCTGGGGAAGCCGGTGGTGATGCAATCGCCGACGTCATCTTTGGCCACTTCAATCCTAGTGGAAGGCTACCCATGAGCTGGTACCCACAATCCTACGCA GATAAAGTCTCGATGACCAATATGAACATGAGGCCCGACAATTCAACCGGCTACCCGGGAAGAACATATCGATTCTACACAGGGGAAACCGTTTACACAT TCGGCGACGGCCTCAGCTACTCCCAATTCACCCACAAACTCATCCGGGCTCCCAAATCGGTTTCGATCCAGTTACGGCCGGATCACGTATGTCATTCCTC GGAATGCCAGTCAGTCGACGCAGCCGATGACATTTGCAGTAGTGGGACCATATTGGATGTGCATCTGAGGGTAAGGAACAGGGGAAGAATGCAGGGAAGC CACACTGTGTTTTTGTTCTCCAGTCCGCCGGCGGTACATAACTCGCCGCGGAAGCACCTCTTGGGCTTCGAGAAAGTTGGGTTGGAAGGGAGAGGTGAGG CGGTGGCTAAGTTCAAGGTTGATCTCTGCAAGGATTTAAGCTTGGTGGATGAGTTTGGGAACAGGAAAGTTGCTCTGGGAGAACATTTGCTTCACGTTGG GGATTTGAAGCACTCTTTCACTGTGGGAATTTGA
AA sequence Show only first row Show all	>Lus10020966 pacid=23148976 polypeptide=Lus10020966 locus=Lus10020966.g ID=Lus10020966.BGIv1.0 annot-version=v1.0 MAAHPPFPNRGFRSRAVVFLFLILVVINGSVVVVRAQNPVFACDVAKTPSLASLGFCNGSISVTERVADLVGRLTLPEKITFLVNSAGNVDRLGIPKYEW WSEALHGVSYVGPGTHFSNVVPGATSFPQVILTAASFNTSLFQAIGKVVSTEARAMHNVGLAGLTFWSPNINILRDPRWGRAQETPGEDPLLTSKYATAY VKGLQQRDDGDEDRLKVAACCKHYTAYDVDNWKGVDRYHFNAIVTKQDMDDTFQPPFKSCVTEGNVASVMCSYNQVNGVPTCADPDLLAGVIRGQWKLNG YIVSDCDSLDVYYKSQHYTKTPEEAAAKAILAGLDLNCGSFLGQHTEAAVIAGLVDESAINNAISNNFATLMRLGFFDGDPRTQLYGKLGPKDVCTEENQ ELAREAARQGIVLLKNNAASLPLSPTTIKNLAVIGPNANVTKTMIGNYEGTPCKYTTPLQGLSASVATTYVAGCQNVACGTAELDEAKKAASSADATILV MGTDLSIEAESLDRTDLTLPGQQQDLVTQVASVSKGPVILVIMSGGGIDVSFAKSSDQISTILWVGFPGEAGGDAIADVIFGHFNPSGRLPMSWYPQSYA DKVSMTNMNMRPDNSTGYPGRTYRFYTGETVYTFGDGLSYSQFTHKLIRAPKSVSIQLRPDHVCHSSECQSVDAADDICSSGTILDVHLRVRNRGRMQGS HTVFLFSSPPAVHNSPRKHLLGFEKVGLEGRGEAVAKFKVDLCKDLSLVDEFGNRKVALGEHLLHVGDLKHSFTVGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64570		ATBXL4, XYL4	ARABIDOPSIS THALIANA BETA-D-XY...		Lus10020966 [exp]	0	1
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040885 [exp]	2.6	0.9358
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Lus10042283 [exp]	3.9	0.9253
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10013295 [exp]	6.5	0.9250
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	9.6	0.9333
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	12.8	0.9259
AT2G42520			P-loop containing nucleoside t...		Lus10029337 [exp]	14.0	0.9103
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009042 [exp]	15.0	0.8676
AT4G29520			unknown protein		Lus10008575 [exp]	15.3	0.8795
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10031492 [exp]	18.0	0.9079
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10004146 [exp]	18.1	0.9255

Compare expression of checked genes

Lus10020966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.