Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14740 1040 / 0 VSR2;2, BP80-2;2, ATVSR3 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) AT2G14720 1027 / 0 VSR4, VSR2;1, MTV4, BP80-2;1, VSR-2 VACUOLAR SORTING RECEPTOR 2;1, binding protein of 80 kDa 2;1, vacuolar sorting receptor 4 (.1.2) AT3G52850 898 / 0 VSR1;1, GFS1, BP80-1;1, ATVSR1, VSR-1, VSR1, BP80B, BP-80, BP80, ATELP1 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) AT2G30290 859 / 0 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2) AT1G30900 774 / 0 VSR6, VSR3;3, BP80-3;3 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) AT4G20110 767 / 0 VSR7, VSR3;1, BP80-3;1 VACUOLAR SORTING RECEPTOR 3;1, binding protein of 80 kDa 3;1, VACUOLAR SORTING RECEPTOR 7 (.1.2) AT2G34940 709 / 0 VSR5, VSR3;2, BP80-3;2 VACUOLAR SORTING RECEPTOR 3;2, binding protein of 80 kDa 3;2, VACUOLAR SORTING RECEPTOR 5 (.1) AT5G66160 47 / 2e-05 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012366 [exp] 1132 / 0 AT2G14740 1055 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10002130 [exp] 1091 / 0 AT2G14740 1025 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10022737 [exp] 889 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10014176 [exp] 875 / 0 AT3G52850 980 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025136 [exp] 863 / 0 AT3G52850 959 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10006944 [exp] 764 / 0 AT1G30900 926 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Lus10025220 [exp] 699 / 0 AT3G52850 754 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025361 [exp] 521 / 0 AT2G14740 454 / 2e-155 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10031104 [exp] 46 / 0.0001 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G294400 [exp] 1100 / 0 AT2G14740 1100 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.009G088900 [exp] 1087 / 0 AT2G14740 1089 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.016G137300 [exp] 915 / 0 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.006G108800 [exp] 912 / 0 AT3G52850 1026 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.003G155200 [exp] 790 / 0 AT1G30900 924 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.001G075600 [exp] 767 / 0 AT1G30900 911 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.016G137350 [exp] 204 / 1e-62 AT3G52850 212 / 2e-66 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.003G155300 [exp] 66 / 6e-13 AT1G30900 86 / 1e-20 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.019G082500 [exp] 49 / 1e-05 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10020967 pacid=23148949 polypeptide=Lus10020967 locus=Lus10020967.g ID=Lus10020967.BGIv1.0 annot-version=v1.0 ATGACGATGCCAAGACCAGTGGTTTCAAGTATGTGCTTGGGGTTTTGGTTATTTATTGCGTCTTTGATTTTACCCTGTTCGGTGGCGAGATTTATCGTGG AGAAGAACAGTCTGAGAGTGACATCTCCGGACAAGATTAAAGGCACTTACGACAGTGCGATTGGCAATTTTGGGATTCCACAATATGGTGGTAGCATGGC CGGGACTGTGGTCTACCCTAAGGACAACAAAAACGGTTGCAAGAAGTTTGACGACTTCGGCATTTCATTCAAGTCCAACCCTGGAGCTATGCCCACTTTC GTTTTGGTGGATCGTGGAGATTGCTTCTTTGCGCTGAAGGTTTGGAATGTTCAGAATGCGGGAGCATCTGCTGTGCTTGTTGCTGATGACACTGATGAAG CACTGATAACCATGGACACACCTCAGGAAGATGGTTCATCTGCAAAATATGTTGAGAACATAACTATACCATCTGCTCTTATTGAGAAAGGCTTCAGTGA CACATTAAAGAAATCACTTGGCAATGGGGATATGGTGAATGTAAACCTTGATTGGAGAGAAGCTGTTCCACACCCGGACGACCGTGTGGAGTATGAGCTG TGGACCAACAGTAATGATGAATGTGGTGTCAAATGTGACATGTTGATGCAATTTGTGAAGGAGTTCAAGGGTGCGGCACAGATACTTGAAAGAGGTGGCT ATACTCTGTTTGCTCCTCATTACATAACTTGGTATTGTCCACAAGCATTTACACTGAGCAAGCAATGCAAGTCACAGTGTATAAACCATGGAAGATATTG TGCTCCGGATCCTGAGCAGGATTTCAGCACTGGCTATGACGGAAAAGACGTTGTTCTTGAAAACTTAAGACAATTGTGTGTTTTTAAAGTAGCAAATGAG ACCCAACGACCCTGGGCGTGGTGGGATTATGTAACTGATTTTCAGATCAGATGTCCAATGAAAGAGAAAAAGTACAATAAGGAATGTGCTGATAGTGTTA TTAGATCTCTTGGACTTGACATGAAAAAGATTGAGAAGTGTATGGGAGATCCTGATGCTGATTCGGATAATCCTGTTTTGAAAGAAGAACAAGATGCCCA GGTTGGCAAAGGATCCAGGGGTGATGTTACTATACTGCCTACTCTTGTAGTCAATAATCGACAATATCGAGGGAAGTTGGAGAAAGGTGCTGTTCTGAAA GCCATATGTTCTGGTTTCGAAGAAACTACTGAACCAGCTGTTTGCTTGACTGGTGATGTCGAGTCAAATGAGTGCTTGGAGAATAATGGTGGTTGCTGGA AAGATAACGTTGCAAACATCACTGCCTGTAAGGACACATTTCGTGGGAGGGTATGTGAGTGTCCCCTTGTTGATGGTGTGCAATTCAAAGGAGATGGTTA CAGTCACTGTGAAGTGAGTGGACCTGGAAGGTGCAAGATAAACAATGGTGGCTGTTGGCATGAATCACGAGATGGGCATGCATTCTCTGCTTGCTTGGAT GTTGATGGGGGTAAGTGCCAGTGTCCTGCTGGATTTAAGGGCGACGGTGTAAGCAATTGTGTAGATATTGACGAGTGCAAGGAAAAGAAAGCATGCCAGT GTGCTGAATGCAGTTGTAAGAATACATGGGGAAGTTATGATTGCAGTTGCAGTGGAGGTCTTCTTTACATTAAAGACCATGATACCTGCATAGGTGGTAA GGCTGGTAGTAGTGAAGTGAGATCTGCATGGGCTGCTGTTTGGGTCATCTTTATTGGATTGTCAATGGCTGCTGGTGGAGGTTATCTCATCTACAAGTAC CGATTAAGGTCGTACATGGACTCGGAGATCAGGGCTATCATGGCTCAATACATGCCTCTGGAGAGTCAAACAGAAGTGCCGAATCACATTGACGACCAAC ACGCTTGA
AA sequence Show only first row Show all	>Lus10020967 pacid=23148949 polypeptide=Lus10020967 locus=Lus10020967.g ID=Lus10020967.BGIv1.0 annot-version=v1.0 MTMPRPVVSSMCLGFWLFIASLILPCSVARFIVEKNSLRVTSPDKIKGTYDSAIGNFGIPQYGGSMAGTVVYPKDNKNGCKKFDDFGISFKSNPGAMPTF VLVDRGDCFFALKVWNVQNAGASAVLVADDTDEALITMDTPQEDGSSAKYVENITIPSALIEKGFSDTLKKSLGNGDMVNVNLDWREAVPHPDDRVEYEL WTNSNDECGVKCDMLMQFVKEFKGAAQILERGGYTLFAPHYITWYCPQAFTLSKQCKSQCINHGRYCAPDPEQDFSTGYDGKDVVLENLRQLCVFKVANE TQRPWAWWDYVTDFQIRCPMKEKKYNKECADSVIRSLGLDMKKIEKCMGDPDADSDNPVLKEEQDAQVGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLK AICSGFEETTEPAVCLTGDVESNECLENNGGCWKDNVANITACKDTFRGRVCECPLVDGVQFKGDGYSHCEVSGPGRCKINNGGCWHESRDGHAFSACLD VDGGKCQCPAGFKGDGVSNCVDIDECKEKKACQCAECSCKNTWGSYDCSCSGGLLYIKDHDTCIGGKAGSSEVRSAWAAVWVIFIGLSMAAGGGYLIYKY RLRSYMDSEIRAIMAQYMPLESQTEVPNHIDDQHA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10020967 [exp]	0	1
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10004174 [exp]	2.4	0.8805
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10000334 [exp]	10.0	0.8460
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	13.4	0.8789
AT1G25500			Plasma-membrane choline transp...		Lus10041476 [exp]	26.2	0.8389
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10029049 [exp]	26.5	0.8386
AT5G37720		DIP2, ALY4	interacting with DNA-binding d...		Lus10000446 [exp]	30.6	0.8621
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Lus10040529 [exp]	54.6	0.8428
AT1G36730			Translation initiation factor ...		Lus10010981 [exp]	57.7	0.8042
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	57.8	0.8473
AT5G11500			unknown protein		Lus10037899 [exp]	64.4	0.8534

Compare expression of checked genes

Lus10020967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.