Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36360 288 / 3e-92 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 236 / 2e-72 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT1G45130 232 / 8e-72 BGAL5 beta-galactosidase 5 (.1) AT3G52840 216 / 6e-66 BGAL2 beta-galactosidase 2 (.1) AT4G26140 211 / 2e-64 BGAL12 beta-galactosidase 12 (.1.2) AT2G28470 207 / 6e-62 BGAL8 beta-galactosidase 8 (.1.2) AT5G56870 204 / 1e-61 BGAL4 beta-galactosidase 4 (.1) AT2G32810 188 / 5e-55 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT4G35010 178 / 2e-51 BGAL11 beta-galactosidase 11 (.1) AT2G16730 175 / 2e-50 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025980 [exp] 343 / 4e-113 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10028348 [exp] 305 / 4e-99 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10041798 [exp] 304 / 5e-98 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10024292 [exp] 254 / 3e-80 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1) Lus10000803 [exp] 243 / 4e-76 AT1G45130 1050 / 0.0 beta-galactosidase 5 (.1) Lus10015625 [exp] 235 / 5e-72 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 234 / 6e-72 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 233 / 2e-71 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10006009 [exp] 211 / 6e-64 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G018100 [exp] 310 / 2e-100 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 270 / 3e-85 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 263 / 2e-83 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.006G144500 [exp] 235 / 2e-72 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 231 / 6e-71 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 231 / 8e-71 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G099800 [exp] 204 / 8e-61 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.009G012400 [exp] 193 / 5e-57 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.011G044300 [exp] 191 / 5e-56 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.005G069200 [exp] 182 / 4e-53 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10020968 pacid=23148957 polypeptide=Lus10020968 locus=Lus10020968.g ID=Lus10020968.BGIv1.0 annot-version=v1.0 ATGCAAGGATTCACTGAGAAGATTGTGGGGTTAATGAAGAGTGAAAGCTTGTTCGAGTCGCAAGGTGGCCCCATCATTCTTTCGAAGATTGAAAATGAGT ATGGTGCACAAAGCAAGATGCTTGGTGCTGATGGGTATAACTACATGAGCTGGGCTGCAAACATGGTTGTCAAGATGGGAACTGGAGTTCCATGGGTTAT GTGCAAGGAAGATGATGCTCTAGATCCAGTTGTGAGCTCTTACTATCGTTTACAAACTCGAGGAGTACTCGGTACTACCACATGCATATCATCATTTGGT TTTAGTGGTTATGATCCAGGGCTTGTACTTTACAGGTTTTCTGAGTTTGGGGGTCCTAATCATCAGCGCCCGGTTGAGGATTTGGCATTTGCTGTTGCTC GGTTTATACAGAAGGGAAGATCATTTGTCAACTACTACATGCCTAAGTATGGTCATCTTAAGGAGCTCAACAGGTCTATTAAGATGTGTGAGCGTACTCT CTTCTCTGCCAATCCTGTTGTGACTCAGTTAGAAGCCTACCAACAGGATTGTGCAGCTTTTCTTGCCAACTACGACACAAAATCTGCTACGAAAGTGATG TTCAACAACGTGCATTTCAAGTTGGCTCCTTGGTCCATTAGCATTCTTCCGGATTGCAGAAACATTGTGTTTAACACTGCAAATGTATGA
AA sequence Show only first row Show all	>Lus10020968 pacid=23148957 polypeptide=Lus10020968 locus=Lus10020968.g ID=Lus10020968.BGIv1.0 annot-version=v1.0 MQGFTEKIVGLMKSESLFESQGGPIILSKIENEYGAQSKMLGADGYNYMSWAANMVVKMGTGVPWVMCKEDDALDPVVSSYYRLQTRGVLGTTTCISSFG FSGYDPGLVLYRFSEFGGPNHQRPVEDLAFAVARFIQKGRSFVNYYMPKYGHLKELNRSIKMCERTLFSANPVVTQLEAYQQDCAAFLANYDTKSATKVM FNNVHFKLAPWSISILPDCRNIVFNTANV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10020968 [exp]	0	1
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030460 [exp]	3.6	0.9219
					Lus10038768 [exp]	6.0	0.8819
AT1G33670			Leucine-rich repeat (LRR) fami...		Lus10041065 [exp]	13.7	0.8770
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	14.4	0.8986
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10041064 [exp]	16.5	0.8863
					Lus10019690 [exp]	16.9	0.8683
					Lus10019691 [exp]	18.5	0.8426
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10034374 [exp]	19.6	0.8831
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10024246 [exp]	21.5	0.8932
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039363 [exp]	22.0	0.8514

Compare expression of checked genes

Lus10020968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.