Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33910 91 / 2e-22 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G23096 73 / 1e-15 P4H13 prolyl 4-hydroxylase 13, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G28480 43 / 4e-05 Oxoglutarate/iron-dependent oxygenase (.1.2) AT1G20270 39 / 0.001 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011084 [exp] 63 / 2e-13 AT4G33910 120 / 4e-35 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10011085 [exp] 50 / 2e-07 AT4G33910 241 / 4e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032184 [exp] 42 / 6e-05 AT3G28480 206 / 2e-67 Oxoglutarate/iron-dependent oxygenase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G091000 [exp] 94 / 3e-23 AT4G33910 431 / 9e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G296800 [exp] 88 / 4e-21 AT4G33910 441 / 6e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.007G052600 [exp] 74 / 5e-16 AT4G33910 353 / 4e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020969 pacid=23148951 polypeptide=Lus10020969 locus=Lus10020969.g ID=Lus10020969.BGIv1.0 annot-version=v1.0 ATGCCATCATTCAGATCACAAAGCCCAAACTTGGACCCTCTCTCCTTGCCTTGCGTGAGGGAGAAAGTGCCGAGAGTACTAAGGGCACTAGAACCAGGCA CCTTTATCTCTGCATCGGAAGATGAAACTGGAACCTTGGCTTCGATTGAACAAAAAATTGCAAGAGCTACCATGATCCCGACTACCCATGGTGAGAATGG CACAAAAATCCCCGGATATGATTACAAACAATGTGTTGGTTTAAAAGTGAAGCCTCGGCAAGGCGACGGCCTTTTATTTTACAATGTTTTTCCTAATGGC ACAATTGATAAGGCAGTCATGGGAGGCAACTACCATGGAGGTTACTTCCCACGTCTTGATATAATTTCCCTTCCTCAACTGTCTTGGATTGTAGTGTTGG CGGTTTCTTCTCTTCAACGACTTTGGTGTTCTCTTATTGGTGAGATACTTTGGAGTGTGAATATGATTGAGGTCGTCGACAAGATGACAATACTAGATGG TACTGATGAGATAACAGGGATGGCATGGAGGCATACATCGTAA
AA sequence Show only first row Show all	>Lus10020969 pacid=23148951 polypeptide=Lus10020969 locus=Lus10020969.g ID=Lus10020969.BGIv1.0 annot-version=v1.0 MPSFRSQSPNLDPLSLPCVREKVPRVLRALEPGTFISASEDETGTLASIEQKIARATMIPTTHGENGTKIPGYDYKQCVGLKVKPRQGDGLLFYNVFPNG TIDKAVMGGNYHGGYFPRLDIISLPQLSWIVVLAVSSLQRLWCSLIGEILWSVNMIEVVDKMTILDGTDEITGMAWRHTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Lus10020969 [exp]	0	1
					Lus10001326 [exp]	6.9	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	8.7	1.0000
					Lus10026755 [exp]	12.0	1.0000
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008511 [exp]	13.9	1.0000
AT1G04410		c-NAD-MDH1	cytosolic-NAD-dependent malate...		Lus10021183 [exp]	14.7	1.0000
AT2G43610			Chitinase family protein (.1)		Lus10020253 [exp]	15.5	1.0000
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10028908 [exp]	17.9	1.0000
					Lus10040552 [exp]	17.9	1.0000
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10023221 [exp]	20.4	1.0000
					Lus10002413 [exp]	21.4	1.0000

Compare expression of checked genes

Lus10020969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.