Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17930 112 / 1e-26 Aminotransferase-like, plant mobile domain family protein (.1) AT2G04865 99 / 9e-22 Aminotransferase-like, plant mobile domain family protein (.1) AT2G25010 90 / 5e-19 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 76 / 2e-14 hydrolases;protein serine/threonine phosphatases (.1) AT1G51538 64 / 1e-10 Aminotransferase-like, plant mobile domain family protein (.1) AT4G16050 60 / 3e-09 Aminotransferase-like, plant mobile domain family protein (.1) AT5G18510 55 / 8e-08 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50820 49 / 4e-06 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50770 49 / 5e-06 Aminotransferase-like, plant mobile domain family protein (.1) AT1G50830 47 / 2e-05 Aminotransferase-like, plant mobile domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027047 [exp] 682 / 0 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1) Lus10001981 [exp] 329 / 2e-111 AT1G17930 61 / 2e-10 Aminotransferase-like, plant mobile domain family protein (.1) Lus10003430 [exp] 291 / 9e-96 AT5G51100 60 / 6e-10 Fe superoxide dismutase 2 (.1) Lus10008761 [exp] 245 / 2e-76 AT2G25010 79 / 1e-15 Aminotransferase-like, plant mobile domain family protein (.1) Lus10011950 [exp] 234 / 7e-74 ND 40 / 0.001 Lus10000686 [exp] 230 / 1e-73 AT1G17930 87 / 3e-20 Aminotransferase-like, plant mobile domain family protein (.1) Lus10043081 [exp] 196 / 4e-61 AT1G17930 64 / 2e-12 Aminotransferase-like, plant mobile domain family protein (.1) Lus10012087 [exp] 183 / 7e-55 AT1G17930 57 / 4e-09 Aminotransferase-like, plant mobile domain family protein (.1) Lus10004818 [exp] 183 / 1e-53 AT1G17930 56 / 2e-08 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10020970 pacid=23148969 polypeptide=Lus10020970 locus=Lus10020970.g ID=Lus10020970.BGIv1.0 annot-version=v1.0 ATGGCGAAAACGAAAGGCGGAGGTAAATCGCATAGTCGAGATCCGGTAGAGGAAGAAACCGATGGGATCCATAAAATGAGAGGGAAAGGAAAACAAGCGG GCGTTTTAGATCGGATGAAAGAGCGAGTGGTCACCGCTTCGCGGCGGAAAGAGGGAGAGGCAGCGAAGAAGAACAAGAAGTTGAGAATCTACGACTACCC TGACCGAATGAGGGCGTCTTGCGCGGGTCCGGGCGGAGGATGCCGCACCGCCAGTGCAGTAGACTTTTTTGGGCTTAGTCGTACATGGGAGCTCACAGCT GGGATTCCCGAGGGGGGACCGAGGACGCCGACAGTGATCCCGAGCTTCTGGGGTCACAGTGCACACTGCTTGTGGGAGTCGGGCGAGGGCTACAGGGATC TTAAGGTATTCAGGTTCCTTAAGCGCCCTAAGCAGTGGGACGCTGTGAGCGAGTTCGACATCCAGACGAGGACCATTTGGCTGATCATGCAGGAGACGAG ACTTCTTCACTTGGGCCGGTGCATGTCGACCCACTATGATGAGCCTCTTCTGGAGGCATTTGTTGAGAGGTGGCAGCCGGATACTAACACCTTTCACATG CCGTGGGGAGAGATGACGATCACTTTGCACGACGTCTTCCACATTCTCCGGGTCCCGGTCACTGGACGACCGCTTCATAAGCCCCGACCTCTGGTTGACT TGAGAGCGGGTGTAGCGGAGTCGCTTGGCTTCAGCTCAGCTGCTGCGTTGGAGTACGCGGTCAGGGGGGAGACGGTTGGGCCACCCCTGTATGATCATGG TGCCATGCACGAGAGGGACATGATCTCCCTGGGGAAGCATATGGGGGACGAGACTGCGTATAGGGTATTCCTCTTCTGTCTTCTTGGAGGTACCCTTTTC CAGGATAGATCAGCTGATCGATCATGCCTTCTTGGTTGGGATTACTTCATGGGTTCGATCAATGATGTGCCGGAGTACGCTTGGGGTGCTGGTGCGCTGA CCTGGTTGTATCGGGAGGTAGGGGAGGCTAGCAGGGCGGATGCCAAGGTGATGTCAGGTTGTGTGACGTTGCTTCAGTCCTGGATATATGATTACTTCCC TAGTGTGAGGCCTCCGAGGACGGTTCGACAGGAGCGTAGGGCAGGAGAGGCGTTAGCTGGTAGGTGGGATAGTGCAGAGACACCTAGTCGGGGTGGTGGG GTCCTACGTGAGAGGTTGAACTACTATCGGCGCCTCCTTGATAACATGGATTCCCGTGATGTGAGTTGGCTTCCTTTTGGGCCGCATCCCGACCTTGAGG TCCCGGCCTCGACTTTCCGTGGTCTCATCCGTTGCGCCGACGTAGGTGAGTACTACGATTCCTATCTGACTTAG
AA sequence Show only first row Show all	>Lus10020970 pacid=23148969 polypeptide=Lus10020970 locus=Lus10020970.g ID=Lus10020970.BGIv1.0 annot-version=v1.0 MAKTKGGGKSHSRDPVEEETDGIHKMRGKGKQAGVLDRMKERVVTASRRKEGEAAKKNKKLRIYDYPDRMRASCAGPGGGCRTASAVDFFGLSRTWELTA GIPEGGPRTPTVIPSFWGHSAHCLWESGEGYRDLKVFRFLKRPKQWDAVSEFDIQTRTIWLIMQETRLLHLGRCMSTHYDEPLLEAFVERWQPDTNTFHM PWGEMTITLHDVFHILRVPVTGRPLHKPRPLVDLRAGVAESLGFSSAAALEYAVRGETVGPPLYDHGAMHERDMISLGKHMGDETAYRVFLFCLLGGTLF QDRSADRSCLLGWDYFMGSINDVPEYAWGAGALTWLYREVGEASRADAKVMSGCVTLLQSWIYDYFPSVRPPRTVRQERRAGEALAGRWDSAETPSRGGG VLRERLNYYRRLLDNMDSRDVSWLPFGPHPDLEVPASTFRGLIRCADVGEYYDSYLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17930			Aminotransferase-like, plant m...		Lus10020970 [exp]	0	1
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Lus10036665 [exp]	5.2	0.8961
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029575 [exp]	11.9	0.8690
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014690 [exp]	17.3	0.8612
AT1G62940		ACOS5	acyl-CoA synthetase 5 (.1)		Lus10025842 [exp]	18.7	0.8605
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	19.1	0.8626
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	23.9	0.8576
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10040083 [exp]	27.8	0.8545
					Lus10027774 [exp]	28.5	0.8133
					Lus10010253 [exp]	28.6	0.8185
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	28.7	0.8556

Compare expression of checked genes

Lus10020970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.