Plant FIBer expression Database

Lus10020971 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G15000 121 / 4e-37 unknown protein
AT4G34265 86 / 3e-23 unknown protein
AT4G17310 44 / 5e-07 unknown protein
AT5G11630 44 / 5e-07 unknown protein
AT5G47455 42 / 4e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025365
[exp]
195 / 2e-66 AT2G15000 126 / 2e-39 unknown protein
Lus10026596
[exp]
133 / 5e-42 AT2G15000 123 / 6e-38 unknown protein
Lus10013885
[exp]
83 / 2e-21 AT2G15000 82 / 6e-21 unknown protein
Lus10028954
[exp]
39 / 7e-05 AT4G17310 100 / 5e-29 unknown protein
Lus10007477
[exp]
38 / 0.0002 AT4G17310 95 / 6e-27 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G093400
[exp]
137 / 2e-43 AT2G15000 73 / 4e-18 unknown protein
Potri.001G298800
[exp]
134 / 3e-42 AT2G15000 78 / 4e-20 unknown protein
Potri.017G068600
[exp]
47 / 8e-08 AT4G17310 94 / 2e-26 unknown protein
Potri.001G333800
[exp]
40 / 4e-05 AT5G47455 54 / 1e-10 unknown protein
PFAM info
Representative CDS sequence
>Lus10020971 pacid=23148954 polypeptide=Lus10020971 locus=Lus10020971.g ID=Lus10020971.BGIv1.0 annot-version=v1.0
ATGGCTTGGCGCAGTGGAGCCTCTTCCTTCTCACGCTCCTTGATGTCTGCCACCAGGGCACCGTCGATGCGTCCCTCGTCAGCTCCTATTCCCCGCCTCC
GTCCGCCGTCCACCTCCTCCCCTGGGGTCCAGTCCCGCCGAGTCTCCTTTTCTCCTTCCAGGAACTTGGGAGAGCTAGGATGCACTCAGTCTTTCTTGCC
ACTATATAGTGTGGTCGCCAAGACCCAGCTCACTTCTCAGCTCAATGCTAATTTGCGGGCTTTCAGCGAGCTGTGTCATGGTACCTTCTGCCGTTCTTGT
CAAGATCGCTAG
AA sequence
>Lus10020971 pacid=23148954 polypeptide=Lus10020971 locus=Lus10020971.g ID=Lus10020971.BGIv1.0 annot-version=v1.0
MAWRSGASSFSRSLMSATRAPSMRPSSAPIPRLRPPSTSSPGVQSRRVSFSPSRNLGELGCTQSFLPLYSVVAKTQLTSQLNANLRAFSELCHGTFCRSC
QDR

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G15000 unknown protein Lus10020971
[exp]
0 1
AT3G21400 unknown protein Lus10037507
[exp]
4.2 0.8729
AT5G43970 ATTOM22-V, TOM2... TRANSLOCASE OUTER MITOCHONDRIA... Lus10024950
[exp]
7.2 0.8895
AT2G15000 unknown protein Lus10025365
[exp]
8.7 0.8545
AT4G35490 MRPL11 mitochondrial ribosomal protei... Lus10035432
[exp]
9.2 0.8754
AT1G32580 plastid developmental protein ... Lus10023744
[exp]
11.0 0.8635
AT2G42520 P-loop containing nucleoside t... Lus10000848
[exp]
11.5 0.8434
AT4G19950 unknown protein Lus10018322
[exp]
13.7 0.8416
AT5G52810 NAD(P)-binding Rossmann-fold s... Lus10027529
[exp]
14.4 0.8528
AT1G80480 PTAC17 plastid transcriptionally acti... Lus10018172
[exp]
15.9 0.8438
AT5G38830 Cysteinyl-tRNA synthetase, cla... Lus10021862
[exp]
16.3 0.8642

Lus10020971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.