Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48840 835 / 0 Plant protein of unknown function (DUF639) (.1) AT3G18350 822 / 0 Plant protein of unknown function (DUF639) (.1) AT5G23390 486 / 8e-163 Plant protein of unknown function (DUF639) (.1) AT2G21720 283 / 3e-85 Plant protein of unknown function (DUF639) (.1) AT1G71240 210 / 8e-58 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013865 [exp] 1084 / 0 AT3G18350 897 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10026581 [exp] 1060 / 0 AT1G48840 870 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010155 [exp] 460 / 5e-153 AT5G23390 781 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010668 [exp] 286 / 9e-87 AT2G21720 775 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10007431 [exp] 281 / 1e-84 AT2G21720 767 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10002408 [exp] 202 / 4e-55 AT1G71240 941 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10027905 [exp] 141 / 2e-34 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G046500 [exp] 964 / 0 AT1G48840 942 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.012G055800 [exp] 954 / 0 AT1G48840 894 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.008G003000 [exp] 469 / 1e-156 AT5G23390 730 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.013G062700 [exp] 304 / 4e-93 AT2G21720 839 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.001G210200 [exp] 220 / 1e-61 AT1G71240 968 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF04842 [flax] [poplar] DUF639 Plant protein of unknown function (DUF639)
Representative CDS sequence Show only first row Show all	>Lus10020973 pacid=23148979 polypeptide=Lus10020973 locus=Lus10020973.g ID=Lus10020973.BGIv1.0 annot-version=v1.0 ATGATTGAGGGTTTCGTAAGAGAAGGATCCTTTAAATGGTTACTTGGGAAGCGGACTTACTTTGATGAGGAATTTGAGGAAATGGGGAAGTCACCATCTG CTAGTAGTAATTGGATTGGAGAGCTGTCCCCAGTTGCTAATATTGTGGTTCGTAGATGCTCTACAATGCTTGGCACGTCTACAACTGGTCTCCAAGAAAA TTTCAATAAAGATGCTTCTGATTCCATAAAACATCCATCTTGCTATGCGAGAAACTTTTTGGAATGCTGTTGCTTCAGGGCGTTGGCTGTTTCCATCCAG GTAAAAGGACATCTGGGAGATAAGAAGTTTCGACGATTGGCATTTGATATGATGTTAGCCTGGGAGACTCCAGCTGCTTCCAGTCAACCCATAGCAAATG TAGATGGAGACCTTACAGTTGGGCTAGAGGCCTTTTCTCGGATAGCCCCAGCAGTTCCAATCGTTGCTAATGTTGTTGTTAGTGAAAATCTCTTTAAAGT GCTTACTATGTCATCTGGTCGGCGGCTCCAATTTTCTGTCTTTGACAAATACCTCTGTGGATTGGAAAGAGCGGTCAAAAAGATGAAATCCCAATCAGAT TCATCACTTCTTTCTGATGCCCGGTTGACAAAAAGAGAGAGGATTTTAGAAGTGGATGGAACAGTCACCACCCAACCAGTTCTAGAACACGTAGGTGTAT CTACTTGGCCTGGTCGCTTAACTCTTACGGATCATGCCTTATACTTTGAATCTCTTCGTGTTGTATCCTATGACAAGCCAAAAATATATGATCTGTCTGA AGACATGAAGCAAGTTGTTAAACCTGAACTAACTGGACCATGGGGGACTCGACTCTTCGACAAAGCAGTTTTTTATGGCTCTACGTCTTTATCAGAGCCT GCTATTATAGAGTTCCCTGAGCTCAAAGGACACACTCGCCGCGATTATTGGCTTGCAATTATCCGTGAAATTTTGCTGGTCCACAAATTTATGAAAAAGT TTCAGATCTCAGGAGTTGCACGTGAAGAGGCTCTGTCAAAAGCAGTACTTGGAATCTTGCGGTTACAAGCAATTCAAGATCTTAGTTCAATAGATTTAGC TCGGCATCAGGATATTCTCATGTTTAATCTGTGTGAGCAACTCCCTGGTGGAGATTTAATACTAAAGACTATTGCAAATATGTCATCGACGAGAGAATTG GAGCGAGCTAACCATTATAAGCATGAAGTGGGGATGTACTCAGCGTCATCGCTTGCCATGGTTTCCGGTTTAGGATTTGTTTTTGGTCCAAGTGCAAGCG ATTCTAATGTTACTGTACTTGTTGTTGGTGAAGTAACTGTTGGTGAGATGAGTTCTTTGGAAAGAGCAGTCAGGGAATCAAAAGACAGCTACAAAAAGGT CGTTGTAGCTCAAGCCACTGTTGAAGGAGTTAAAGTTGATGGGCTCGATACTAATCTGGCCGTGATGAAGGATTTACTGCTCCCTGCGATAGATGTTGGG AAGTGGCTTCAGTCCCTGCTGTATTGGTATAACGCAAAGAAATCCCTGGCGTTCTGTTTGTTCTTCTCTTTTGTCATCTGGAAGGGATGGTTGGGCTATG CTTTCTCAGTGATGCTTGGTTCGCTGGCCGTTTTGATGCTGGTTACTCGATTCATCAACCGAGGCAGGCCTGTTGATGAGCTGAAGGTTATAGCACCTCC AGCGATGAACACGATGGAACAGCTTTTGGCGGTCCAGAATGCAATATCGCAGGTGGAACAGCTCATCCAGGATGGGAACATTGGCCTGCTTAAAGTGAGA GCTTTGCTGATTGCGGTGTTCCCTCAGGCCAGCGACAAATTTGCATTTGCACTGTTGGGTTTCGGGATAGTGATGGCTATCTTACCATTGAAGTATTTAC TTCTGTTGAGCTTCCTGGAGTTGTCTACGAGGTACTCGCCAGCAAGGAAAGATAGCACGGAGAGATGTGAAAGGCGAATGAGAGAATGGTGGTTCAGCAT ACCAGCAGCACCAGTGGTATTCCACAGGGAAAGGGACGATAAGAAGAAACAGTAG
AA sequence Show only first row Show all	>Lus10020973 pacid=23148979 polypeptide=Lus10020973 locus=Lus10020973.g ID=Lus10020973.BGIv1.0 annot-version=v1.0 MIEGFVREGSFKWLLGKRTYFDEEFEEMGKSPSASSNWIGELSPVANIVVRRCSTMLGTSTTGLQENFNKDASDSIKHPSCYARNFLECCCFRALAVSIQ VKGHLGDKKFRRLAFDMMLAWETPAASSQPIANVDGDLTVGLEAFSRIAPAVPIVANVVVSENLFKVLTMSSGRRLQFSVFDKYLCGLERAVKKMKSQSD SSLLSDARLTKRERILEVDGTVTTQPVLEHVGVSTWPGRLTLTDHALYFESLRVVSYDKPKIYDLSEDMKQVVKPELTGPWGTRLFDKAVFYGSTSLSEP AIIEFPELKGHTRRDYWLAIIREILLVHKFMKKFQISGVAREEALSKAVLGILRLQAIQDLSSIDLARHQDILMFNLCEQLPGGDLILKTIANMSSTREL ERANHYKHEVGMYSASSLAMVSGLGFVFGPSASDSNVTVLVVGEVTVGEMSSLERAVRESKDSYKKVVVAQATVEGVKVDGLDTNLAVMKDLLLPAIDVG KWLQSLLYWYNAKKSLAFCLFFSFVIWKGWLGYAFSVMLGSLAVLMLVTRFINRGRPVDELKVIAPPAMNTMEQLLAVQNAISQVEQLIQDGNIGLLKVR ALLIAVFPQASDKFAFALLGFGIVMAILPLKYLLLLSFLELSTRYSPARKDSTERCERRMREWWFSIPAAPVVFHRERDDKKKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	0	1
AT1G13990			unknown protein		Lus10036787 [exp]	1.4	0.9057
AT1G13880			ELM2 domain-containing protein...		Lus10000680 [exp]	2.4	0.8834
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	2.8	0.8814
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10005749 [exp]	3.0	0.8810
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10041543 [exp]	3.5	0.8981
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	3.5	0.9023
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	3.9	0.8860
AT1G12855			F-box family protein (.1)		Lus10029699 [exp]	5.8	0.8606
AT3G26890			unknown protein		Lus10035170 [exp]	6.0	0.8736
AT3G45620			Transducin/WD40 repeat-like su...		Lus10034751 [exp]	6.6	0.8747

Compare expression of checked genes

Lus10020973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.