Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42860 42 / 5e-05 zinc knuckle (CCHC-type) family protein (.1) AT5G13920 42 / 0.0001 GRF zinc finger / Zinc knuckle protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025368 [exp] 285 / 4e-100 AT3G42860 44 / 1e-05 zinc knuckle (CCHC-type) family protein (.1) Lus10013881 [exp] 135 / 8e-41 ND 37 / 0.003 Lus10032472 [exp] 43 / 8e-06 ND 35 / 0.004 Lus10004093 [exp] 42 / 3e-05 ND 39 / 6e-04 Lus10011629 [exp] 41 / 8e-05 ND 39 / 6e-04 Lus10014888 [exp] 40 / 0.0002 ND 39 / 7e-04 Lus10026593 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G094001 [exp] 120 / 8e-35 AT3G42860 44 / 3e-05 zinc knuckle (CCHC-type) family protein (.1) Potri.001G318100 [exp] 43 / 3e-05 AT3G42860 211 / 8e-66 zinc knuckle (CCHC-type) family protein (.1) Potri.009G112676 [exp] 40 / 0.0003 AT5G13920 116 / 7e-28 GRF zinc finger / Zinc knuckle protein (.1) Potri.T125604 [exp] 40 / 0.0003 AT5G13920 115 / 1e-27 GRF zinc finger / Zinc knuckle protein (.1) Potri.T125504 [exp] 40 / 0.0004 AT5G13920 106 / 1e-25 GRF zinc finger / Zinc knuckle protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF06839 [flax] [poplar] zf-GRF GRF zinc finger
Representative CDS sequence Show only first row Show all	>Lus10020975 pacid=23148982 polypeptide=Lus10020975 locus=Lus10020975.g ID=Lus10020975.BGIv1.0 annot-version=v1.0 ATGAGCGACTGTGATGGATCTGATGCAAGTTCATGTCATGGTTCTGATTTGGGCTACGATGATTCGGCGCCACAATGCGCTTGTGGATTGCCTTCCAAAC TACGTATCTCTCAAACCGCCAGGAACCCGTTTCGCTTATTTTACAACTGCCCAAGGAGATACGAGCAATGTGACTTCTTCCGTTGGTGTGATGATCCATC CCTAACTGGTGATAGGCATGCTGAAGAGCTAAACCTGATTCGCAATACATGCACCCGACTTCAACGTAGATTGAGTAAAGCCCAACGCGACCATGAGAGT GAAAGAGACAAGTGGGAAATTGAAAAAGAGGAGCTTATCTCTAAACTGTACAAATTTCAACTAGAGTTAGATGAATACAAACAGATGATTAAGCTTGCTG CAGAGTCTGATCTTATGCCACCAATTGATGATCAAATCTGGAAATGTGAAGACGACGATGATGCTGCTATTGAGATACATGCTATCTCTAATTAA
AA sequence Show only first row Show all	>Lus10020975 pacid=23148982 polypeptide=Lus10020975 locus=Lus10020975.g ID=Lus10020975.BGIv1.0 annot-version=v1.0 MSDCDGSDASSCHGSDLGYDDSAPQCACGLPSKLRISQTARNPFRLFYNCPRRYEQCDFFRWCDDPSLTGDRHAEELNLIRNTCTRLQRRLSKAQRDHES ERDKWEIEKEELISKLYKFQLELDEYKQMIKLAAESDLMPPIDDQIWKCEDDDDAAIEIHAISN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13920			GRF zinc finger / Zinc knuckle...		Lus10020975 [exp]	0	1
AT2G40170		GEA6, ATEM6	LATE EMBRYOGENESIS ABUNDANT 6,...		Lus10030394 [exp]	2.8	0.7351
AT5G62840			Phosphoglycerate mutase family...		Lus10030165 [exp]	6.3	0.6776
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10034969 [exp]	13.3	0.6330
AT3G03470		CYP89A9	"cytochrome P450, family 87, s...		Lus10020361 [exp]	16.2	0.6051
					Lus10024622 [exp]	17.0	0.6271
AT1G14200			RING/U-box superfamily protein...		Lus10042171 [exp]	19.2	0.5861
AT2G39350		ABCG1	ATP-binding cassette G1, ABC-2...		Lus10025149 [exp]	22.9	0.5994
AT2G06090			Plant self-incompatibility pro...		Lus10029389 [exp]	24.5	0.5994
AT5G16100			unknown protein		Lus10004035 [exp]	30.0	0.5453
					Lus10021867 [exp]	30.0	0.6103

Compare expression of checked genes

Lus10020975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.