Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28540 762 / 0 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 760 / 0 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G09080 739 / 0 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G12580 645 / 0 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT3G09440 637 / 0 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G16030 636 / 0 HSP70B heat shock protein 70B (.1) AT5G02500 635 / 0 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G02490 632 / 0 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G56410 627 / 0 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G09590 469 / 7e-158 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022375 [exp] 837 / 0 AT5G28540 767 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10015483 [exp] 798 / 0 AT5G28540 758 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10023043 [exp] 754 / 0 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10017306 [exp] 739 / 0 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017022 [exp] 738 / 0 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10003202 [exp] 697 / 0 AT5G42020 1133 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10028061 [exp] 692 / 0 AT5G28540 664 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10029103 [exp] 667 / 0 AT5G28540 615 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10021345 [exp] 665 / 0 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G018000 [exp] 778 / 0 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.012G017600 [exp] 762 / 0 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G087500 [exp] 760 / 0 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G143600 [exp] 755 / 0 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.010G205700 [exp] 649 / 0 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G042600 [exp] 645 / 0 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205800 [exp] 644 / 0 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 641 / 0 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054600 [exp] 640 / 0 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 639 / 0 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10020977 pacid=23148975 polypeptide=Lus10020977 locus=Lus10020977.g ID=Lus10020977.BGIv1.0 annot-version=v1.0 ATGGCGGAAACTGATAAGGTGAGTGGAGAAGTGATCGGAATCGACCTAGGCACGACTTACTCATGCGTCGCCGTTGCTAGAAACGGGATGATTGAAATCA TAGCTAACGATCAAGGCAACCGAACCACTCCTTCTTCAGTGGCATTCTCTGCCACCGACTCCGAGCGTCTCATTGGAGAGTCCGCAAAGAATCAGGCAGC TCTCAACCCCTTCCGTACCATCTTTGATGTCAAACGCCTCATCGGGAAAAACTACGAGGACGAGGAGGTTCAGAGGGACCTGAGGTACCTGACGTATCCG GTGGTCAACAAGGATGGGAAGCCATACGTTGAAGTGGAAGTCAAAGGTAAAGGAAAAGCCTTCAGCCCTGAAGAGATCAGTGCTATGGTGTTGACCAAAA TGAAAGAAACTGCAGAATTGTACCTCGGGAAGCCTGTGGTCAACGCCGTTGTGACTGTCCCCGCATACTTCAACGATGCTCAACGGAAAGCTACGAAAGA TGCCGGTACGATCGCTGGGCTTAACGTTATCCGGATTATCAACGAGCCTACCGCCGGTGCCTTGGCTTACGGGGTACGCCAAAACCTGACCTCCAAGAAG AGAATATTGGTGTACGATCTAGGAGGAGGGACGTTTGACGTCAGTGTTTTAGAGGTCGAGCATGATTTGTTTGAGGTATTAGCTACGGGCGGAGACACAC ATCTTGGAGGTGGAGACTTCGACCAGAGAGTGATGGATTATTTTATCAAGTTAATAAAACGAAAGTACCAAGTTGATATTTCTGGAGACAAGAAGGCAAT GGGGAAGTTAAGAAGGGAGTGCGAGAGGGCGAAAAGGGTATTGAGCAGTCAGAGTCAGGTTAGAGTCGAGATTGACTCATTCGTCCAGGGTAACGATTTC TCAGAACCATTGACAAGGGCTAAATTTGAAGAATTGAATTTGGATCTGTTCAAGAAAACATTGGAGGTGGTGAAATCCACATTGGAGGATGCGAAAATCG AAAAGAGTGAGATTGAAGAGATTGTATTGGTTGGGGGAAGTACTAGGATTCTTAGAGTGAGGGAGATGTTGAAGCATATGTTCAACGGGAAGGAACCTAG TAACAACGTTAATCCTGATGAAGCGGTGGCTTATGGTGCTGCTCTGCTTGGAGCTAGCCTCACTAACCAACCAACTGCTCCAGACGTGACTTTGTTGGAT GTAACTCCGTTGAGTTTAGGGGTGGCGATTCTGGGTAGTGTGATGTCTGTAGTGATCCCAAGAAATACGCCAGTTCCTGCAACTGTCTGTGATGATGACT ACAAAACCGTCCATGACCAGCAAACTTGTGCCACAATTGAGGTGTATCAAGGTGAAAGAACTCTGGTGAAAGACTGTATCAAGCTTGGGAGCTTTGATCT ATCCGGCATCACACCAGCTCCTAGCGGAGTTGCGAAACTAGAGGTGACATTTGAGATCGACGTGGATGGAATATTAAAGGTAACAGCAAAGGAGACAACT TCAACAAGATCAAAATCTCTGGTAATTACAAATTACAAAGGGAATTTGACTCAAAGGGAGATCGAAAGGATGGTGAAAGATGCAAAGAATATGGCTGAAG AAGATAAGATAGTGAAGGCTCGTATGGATGCTAGGAACACGTTGGAGAGTTTCATTTATGATTTGAAGCACACGATGAGCGATGAAGAAAGTCTGGTGGC GAGCAAGATGAGTTTGGATGACCAAAGGAAAGTAGAACGTGCATTGGGAGAGGCTTCAGATTGGTTGGACGACAACCAAAATGCTACCAAGAAAGATTAT GACAAGAAACTTAAGAAGCTTACCGATCTCTGGAATCCTATTATTACCAAAGTTTATATGCTGCTCAACTAG
AA sequence Show only first row Show all	>Lus10020977 pacid=23148975 polypeptide=Lus10020977 locus=Lus10020977.g ID=Lus10020977.BGIv1.0 annot-version=v1.0 MAETDKVSGEVIGIDLGTTYSCVAVARNGMIEIIANDQGNRTTPSSVAFSATDSERLIGESAKNQAALNPFRTIFDVKRLIGKNYEDEEVQRDLRYLTYP VVNKDGKPYVEVEVKGKGKAFSPEEISAMVLTKMKETAELYLGKPVVNAVVTVPAYFNDAQRKATKDAGTIAGLNVIRIINEPTAGALAYGVRQNLTSKK RILVYDLGGGTFDVSVLEVEHDLFEVLATGGDTHLGGGDFDQRVMDYFIKLIKRKYQVDISGDKKAMGKLRRECERAKRVLSSQSQVRVEIDSFVQGNDF SEPLTRAKFEELNLDLFKKTLEVVKSTLEDAKIEKSEIEEIVLVGGSTRILRVREMLKHMFNGKEPSNNVNPDEAVAYGAALLGASLTNQPTAPDVTLLD VTPLSLGVAILGSVMSVVIPRNTPVPATVCDDDYKTVHDQQTCATIEVYQGERTLVKDCIKLGSFDLSGITPAPSGVAKLEVTFEIDVDGILKVTAKETT STRSKSLVITNYKGNLTQREIERMVKDAKNMAEEDKIVKARMDARNTLESFIYDLKHTMSDEESLVASKMSLDDQRKVERALGEASDWLDDNQNATKKDY DKKLKKLTDLWNPIITKVYMLLN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10020977 [exp]	0	1
AT1G14160			Uncharacterised protein family...		Lus10036770 [exp]	1.4	0.9690
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	4.0	0.9653
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036536 [exp]	6.9	0.9584
AT1G61590			Protein kinase superfamily pro...		Lus10033294 [exp]	8.5	0.9612
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Lus10037904 [exp]	11.4	0.9497
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10036603 [exp]	13.7	0.9440
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10033867 [exp]	18.1	0.9438
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	21.1	0.9444
AT1G70840		MLP31	MLP-like protein 31 (.1)		Lus10020497 [exp]	24.1	0.9429
AT2G22850	bZIP	ATBZIP6	basic leucine-zipper 6 (.1.2)		Lus10019273 [exp]	27.1	0.9262

Compare expression of checked genes

Lus10020977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.