Plant FIBer expression Database

Lus10020978 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009507
[exp]
49 / 4e-07 ND /
Lus10008799
[exp]
44 / 3e-05 ND /
Lus10033009
[exp]
43 / 3e-05 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10020978 pacid=23148948 polypeptide=Lus10020978 locus=Lus10020978.g ID=Lus10020978.BGIv1.0 annot-version=v1.0
ATGATGACAGACTTACATGACCAAATGCTTCAGGCCTTGTGGGTCATACCCACTTATATCGGTGGAAGAGCTGGATGCACAATAGATTTACTCAATAAAA
CTGGTGTACGTTTGTGTTGGGTAAATTGCACAGGGCAATGGCTATTTCTAAGCCCCAAAATTACCAGATTGCTTATATGGTGTTTTTATAGTTGCATATG
TTTTGCAACTTCTGTCCCTGTCTCCATCTACTACGATTCTGATGAGGGTGTTTGGAAACACATGAATCAATGCATTTCACTTTACTACCAGAGTGTTGAA
GCGGGTGAAGAGGGTGAAGAGGATGATAAGGATGAAGAGGATGAAGAGGTTCCACTAAAGTGGAAGGCCAATAAATCACAAGTGAAGGCTACATTGATTG
CCACAGATAATTCAGTCGTTGGACATAGTAAAGGCCAGAAGAGGAAAAGAGATGATGTTGAAGACACTAATGTTTCTTTGAAGGAATCTTTTGTTGCTAC
TCTAGAAATATTACAGGATTTGACGAATTTGTGCACTGAATCAATGGGACAACTTGATGCTTTCATCTTGGTATCTGAAGGTTCCCCCTTGGTAAGCATA
TTTGGAAATTCCAGTACAGGACCAAAATCAGTACCTCTGTCAACTAATGCGAGTAAAGAGCCCAAATCAGTAGTTGACAATGACGACAATAAAAAAGCTT
ACAATGAATCACAACAGACTACTATTGAAAGGGGTGGCCCTAATGGGACAGCAAAAGGAAAAGATGGGGATGATGACACTGAAGGAGGTGGTAAGGGACA
AGGTGATGGTGGGGATGAAGGAAAAGGTTGTGATAATGAACAAAAAAGTGATGATGAGAAGTCGGTGGATCAGAATCTGGATGAGAAGGAAGTTACAAAA
GGGGATGGTGACACTAATGGTGATGATGATGACGATGACTTTGTGCTTGTGGGTTTGTAG
AA sequence
>Lus10020978 pacid=23148948 polypeptide=Lus10020978 locus=Lus10020978.g ID=Lus10020978.BGIv1.0 annot-version=v1.0
MMTDLHDQMLQALWVIPTYIGGRAGCTIDLLNKTGVRLCWVNCTGQWLFLSPKITRLLIWCFYSCICFATSVPVSIYYDSDEGVWKHMNQCISLYYQSVE
AGEEGEEDDKDEEDEEVPLKWKANKSQVKATLIATDNSVVGHSKGQKRKRDDVEDTNVSLKESFVATLEILQDLTNLCTESMGQLDAFILVSEGSPLVSI
FGNSSTGPKSVPLSTNASKEPKSVVDNDDNKKAYNESQQTTIERGGPNGTAKGKDGDDDTEGGGKGQGDGGDEGKGCDNEQKSDDEKSVDQNLDEKEVTK
GDGDTNGDDDDDDFVLVGL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10020978
[exp]
0 1
Lus10007554
[exp]
1.4 0.9681
Lus10018224
[exp]
2.4 0.9668
AT1G75880 EXL1 SGNH hydrolase-type esterase s... Lus10003719
[exp]
2.8 0.9563
AT3G57030 Calcium-dependent phosphotries... Lus10019148
[exp]
3.0 0.9610
Lus10023333
[exp]
5.3 0.8732
Lus10004849
[exp]
5.9 0.9135
Lus10011452
[exp]
7.3 0.9025
AT1G01120 KCS1 3-ketoacyl-CoA synthase 1 (.1) Lus10002691
[exp]
8.5 0.9009
AT3G54200 Late embryogenesis abundant (L... Lus10003238
[exp]
8.5 0.8991
Lus10014008
[exp]
12.4 0.8689

Lus10020978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.