Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34260 991 / 0 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026594 [exp] 1020 / 0 AT4G34260 1100 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10029689 [exp] 1015 / 0 AT4G34260 1039 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013884 [exp] 959 / 0 AT4G34260 1023 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10026595 [exp] 535 / 3e-180 AT4G34260 570 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013883 [exp] 149 / 6e-40 AT4G34260 146 / 1e-39 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299000 [exp] 1085 / 0 AT4G34260 1104 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.001G298900 [exp] 1078 / 0 AT4G34260 991 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093500 [exp] 1065 / 0 AT4G34260 1030 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093900 [exp] 1064 / 0 AT4G34260 1133 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093600 [exp] 44 / 2e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020979 pacid=23148978 polypeptide=Lus10020979 locus=Lus10020979.g ID=Lus10020979.BGIv1.0 annot-version=v1.0 ATGGGATATTCTTCTTCAACTCCCGACCCTCTGAGAGTCACCTTCAGCAGCACAGCTAAGGAGTGGACAGACGCAATCCCCATAGGAAACGGCCGTCTTG GGGCCATGGTGTGGGGAGGAGTTGCCTCCGAGACCATCCAACTCAATGAGGACACGCTCTGGACTGGGATTCCTGGAAACTATGCTGACCCAGATGCTCC AAAGGCTTTAGCAGAGGTCAGAAATCTAGTTGACAATGGAAAATTTGCAGAAGCTAGTAATGCATCCGCTAAATTGTTTGGAGGCCCTACACAAGTTTAC CAACCACTTGGAGACATAAAGCTAGAATTTGATAGCTCTCATGAGAAGTTTGCTGAAGAATCATATTACAGAGAGCTAGACTTGGATACTGCAACTGCTC GAGTTAACTACTCAGTGGGTGATGTTGAATTCACGAGAGAGCATTTTGCATCCAACCCAGATAACCTCATTATCACCAAACTCTCCGCTTCCAAACCTTC TTCTCTATCATTCACCGTATCTCTGGACAGCCAACTAGACCATCGTGCTTACGTCAATGCCCACAATCAAATAGTATTGCTTGGAAGTTGTTCTACACAG CAACAAGACGCAAAGGGGATTCAATTTACTGCTGTTCTCCAGCTTAAAACTAGTAATGATGCATCTATCGTAATTGATGATGATGATGACAAGAAGCTGA AAGTGGAAGGTGCAGACTGGGCTATCTTGCTTCTAGCTGCTTCCTCTTCCTTTGAAGGACCATTCATCGACCCATCCGTTTCGAAGAGAAACTCCACCTC CGACTCTCTTGATACACTTGAATCAGTTGACAAGCTCTCCTATTCAGATTTATATGCTCGCCATATTGATGACTACCAGAATCTTTTTCAACGTGTTTCA TTGCAGCTCCATAAAGGGAAGAATAATTCAGAGGAGGACGACATAGTGGTTCCAACTGTGGATAGGATCAAGTCTTTCCAATATGATGAAGATCCATCCA TGGTGCAGCTCCTTTTCCAATTTGGTCGGTACTTATTAATCTCTAGTTCTCGTCCTGGAAGCCAGGTGTCAAATTTGCAAGGCATATGGAACAAGGATGT TAAGCCTGCGTGGGACTGTGCTCCTCATTTGAATATCAATCTTCAAATGAACTACTGGCCATCACTTGCATGTAATCTCAAGGAGTGTCAGGAGCCATTA TTCGACCTCATTCGATCTCTCTCAATCAGTGGCAGTAAAACGGCAAAGGTGAACTATAAAGCAGGTGGCTGGGTTGTGCATCATGTGTCTGACATATGGG CTAAATCCTCTCCATACCTACGGGATGCTGTTTGGGCAATGTGGCCAATGGGTGGAGCTTGGCTTTGCACCCATTTATGGGAGCATTATTGCTATACCAT GGACAAAGAATTCCTGGAAAAAACAGCATATCCTGTCCTGAAAGGATGCGCTTCATTTTTGGTGGACTGGTTGATGAAAGGGCCTACAGGACATCTACAA ACCAACCCATCTACTTCTCCAGAGCATCATTTTATTGCTCCTGATGGTCAATCTGCTTCAGTCAGCTACTCATCCACGATGGACATGGCAATTATTAAGG AAGTCTTCTCTGCACTTGTTTCTGCTTCTCAGGTTCTTAACGTAAATGAAGATCCTTTGGTCCAGAATGTAATTGAAATTCAAGACAGCCTCTACCCAAC CAAAATTGCCAAAGATGGTTCCATTATGGAATGGGCACAAGATTTCGAGGACCCAGAAATACAACACAGGCACCTGTCTCACCTGTTTGGTCTGTTTCCA GGGCACACAATAACCATTGAGAAAAATCCAGACCTCTGTAAAGCTTCTGAGAAAACTCTGTACAAACGAGGAAAGGAGGGCCCAGGGTGGTCAACTGCGT GGAAAGCTGCATGTTGGGCACGACTAAGGAACAACGAACAAGCTTATGATATGGTCAAACATTTGATTCAGCCGGTTGAATCGCAGCCAAAACCCACGGT CTTTAAAGGTGGATTGTACAGCAACTTGTTCGCCGCACATCCTCCGTTCCAGATTGATGCAAACTTTGGTTTTGCAGCAGCAGTTGCAGAGATGCTTGTC CAGAGTACAATGGAGGATGTGCACTTACTACCTGCTATTCCACTGGAAAAATGGCCAAACGGATTCGTTAAAGGATTGAAGGCTCGTGGTGGATTGACAG TTGATATCAGCTGGAAGGAAGGCGAGCTCCATGAATTTGGAATCTTGCTGGAGAATGATGACGGTGAGGCTAAATTGGTGAAGAAAAGGTTGCATTATAG GGGAAGAAGTACGGAAGCAATCATCTCAGCGGGCCATTTTTACACCTTCGATGTAGCAGAGTTCAAACCAATGGTTGAATAA
AA sequence Show only first row Show all	>Lus10020979 pacid=23148978 polypeptide=Lus10020979 locus=Lus10020979.g ID=Lus10020979.BGIv1.0 annot-version=v1.0 MGYSSSTPDPLRVTFSSTAKEWTDAIPIGNGRLGAMVWGGVASETIQLNEDTLWTGIPGNYADPDAPKALAEVRNLVDNGKFAEASNASAKLFGGPTQVY QPLGDIKLEFDSSHEKFAEESYYRELDLDTATARVNYSVGDVEFTREHFASNPDNLIITKLSASKPSSLSFTVSLDSQLDHRAYVNAHNQIVLLGSCSTQ QQDAKGIQFTAVLQLKTSNDASIVIDDDDDKKLKVEGADWAILLLAASSSFEGPFIDPSVSKRNSTSDSLDTLESVDKLSYSDLYARHIDDYQNLFQRVS LQLHKGKNNSEEDDIVVPTVDRIKSFQYDEDPSMVQLLFQFGRYLLISSSRPGSQVSNLQGIWNKDVKPAWDCAPHLNINLQMNYWPSLACNLKECQEPL FDLIRSLSISGSKTAKVNYKAGGWVVHHVSDIWAKSSPYLRDAVWAMWPMGGAWLCTHLWEHYCYTMDKEFLEKTAYPVLKGCASFLVDWLMKGPTGHLQ TNPSTSPEHHFIAPDGQSASVSYSSTMDMAIIKEVFSALVSASQVLNVNEDPLVQNVIEIQDSLYPTKIAKDGSIMEWAQDFEDPEIQHRHLSHLFGLFP GHTITIEKNPDLCKASEKTLYKRGKEGPGWSTAWKAACWARLRNNEQAYDMVKHLIQPVESQPKPTVFKGGLYSNLFAAHPPFQIDANFGFAAAVAEMLV QSTMEDVHLLPAIPLEKWPNGFVKGLKARGGLTVDISWKEGELHEFGILLENDDGEAKLVKKRLHYRGRSTEAIISAGHFYTFDVAEFKPMVE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10020979 [exp]	0	1
AT3G27210			unknown protein		Lus10035217 [exp]	5.2	0.8156
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10012399 [exp]	6.6	0.7626
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026070 [exp]	12.2	0.8132
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Lus10012925 [exp]	13.3	0.7197
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Lus10034611 [exp]	13.6	0.7058
AT4G22590		TPPG	trehalose-6-phosphate phosphat...		Lus10024607 [exp]	19.0	0.7457
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Lus10014593 [exp]	19.9	0.7248
					Lus10007012 [exp]	22.4	0.7988
AT5G47060			Protein of unknown function (D...		Lus10019494 [exp]	25.0	0.7591
AT5G40870		UKL1, ATUK/UPRT...	URIDINE KINASE-LIKE 1, uridine...		Lus10032051 [exp]	28.3	0.7036

Compare expression of checked genes

Lus10020979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.