Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26070 265 / 2e-89 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G26080 245 / 7e-82 plastid-lipid associated protein PAP / fibrillin family protein (.1) AT5G19940 63 / 9e-12 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) AT5G09820 62 / 5e-11 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) AT4G22240 58 / 1e-09 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT4G04020 57 / 3e-09 FIB fibrillin (.1) AT1G51110 52 / 9e-08 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT2G35490 48 / 3e-06 Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT3G23400 47 / 5e-06 FIB4 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033514 [exp] 68 / 2e-13 AT5G09820 270 / 3e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10020860 [exp] 67 / 3e-13 AT5G09820 269 / 5e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10010444 [exp] 66 / 5e-12 AT1G51110 490 / 2e-173 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10012100 [exp] 64 / 1e-11 AT1G51110 511 / 0.0 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10026221 [exp] 59 / 5e-10 AT5G19940 276 / 4e-94 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10021209 [exp] 57 / 2e-09 AT3G23400 305 / 4e-104 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10011803 [exp] 57 / 2e-09 AT3G23400 307 / 5e-105 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10001099 [exp] 56 / 6e-09 AT4G22240 362 / 5e-126 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10035384 [exp] 56 / 6e-09 AT2G35490 357 / 5e-122 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G209600 [exp] 318 / 2e-110 AT3G26070 253 / 7e-85 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.003G020700 [exp] 280 / 1e-94 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G309300 [exp] 72 / 2e-14 AT5G09820 268 / 7e-90 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Potri.008G169100 [exp] 58 / 1e-09 AT3G23400 267 / 2e-89 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.004G003200 [exp] 57 / 3e-09 AT4G22240 380 / 1e-132 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.006G276400 [exp] 56 / 5e-09 AT5G19940 279 / 2e-95 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Potri.001G137900 [exp] 56 / 7e-09 AT2G35490 301 / 3e-100 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G011700 [exp] 56 / 7e-09 AT1G51110 532 / 0.0 Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.003G095900 [exp] 54 / 4e-08 AT2G35490 334 / 5e-113 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10020982 pacid=23148950 polypeptide=Lus10020982 locus=Lus10020982.g ID=Lus10020982.BGIv1.0 annot-version=v1.0 ATGGCCTTATCTTCTCCTACCACCACTACTTTTGCCACCACCGCCATCTTTTCCGGCCACCCACCACTTCATCAGACACTTTTTCTGCATTCCTCCCACT CTCCGGCCACTGTCCCCATCTTTTCCCTCTCCCGAAGACTGCCCTTCGCCTCCACCACCCTCCATACCAGAAATAGTAACAATAACTGGAGAACCAATGT TTCTTTCCTTCCCGCGTTCTTCAAATCTCCACGGAAAGACGTTAACGCTCTAAAGGCGGAGCTTCTTCAAGCTATCGCCCTTCTCGATCGCGGCGCGGAC GCTACTCCTGATGTCCAGAAAATTGTCGATCAGATTGCTCGAAAGCTGGAATCAGCCAATCCCACTAAGGAGCCATTGAAATCAGATCTGCTGAATGGGA AATGGGAACTTATATACACTACTTCCGTGTCAATTCTCCAGACTCAGAGGCCAAAGTTGCTGAGGTCGAGAACCAACTACCAAGCTATCAATGCGGATAC ATTGCGTGCCCAGAACATGGAATCTTGGCCATTCTTTAACCAAGTAACAGCAGACTTGACCCCTCTCAACGCAAGAAAAGTGGCTGTCAAGTTTGATTAC TTCAAAATCTTTGGTTTGATTCCGGTTAAGGCACCAGAAAGAGCTCGCGGGGAGCTGGAAATCACCTACTTAGATGAAGAGTTGAGAATATCCAGAGGTG ACAAAGGAAACTTGTTTATCCTGAAAATGCTGGATCCTTCTTACCGTGTCCCTGTCTGA
AA sequence Show only first row Show all	>Lus10020982 pacid=23148950 polypeptide=Lus10020982 locus=Lus10020982.g ID=Lus10020982.BGIv1.0 annot-version=v1.0 MALSSPTTTTFATTAIFSGHPPLHQTLFLHSSHSPATVPIFSLSRRLPFASTTLHTRNSNNNWRTNVSFLPAFFKSPRKDVNALKAELLQAIALLDRGAD ATPDVQKIVDQIARKLESANPTKEPLKSDLLNGKWELIYTTSVSILQTQRPKLLRSRTNYQAINADTLRAQNMESWPFFNQVTADLTPLNARKVAVKFDY FKIFGLIPVKAPERARGELEITYLDEELRISRGDKGNLFILKMLDPSYRVPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26070			Plastid-lipid associated prote...		Lus10020982 [exp]	0	1
AT4G14450		ATBET12	unknown protein		Lus10021878 [exp]	1.0	0.9455
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Lus10020199 [exp]	2.4	0.9326
AT4G26860			Predicted pyridoxal phosphate-...		Lus10032558 [exp]	4.7	0.9113
AT2G36895			unknown protein		Lus10023001 [exp]	6.0	0.9218
AT1G34000		OHP2	one-helix protein 2 (.1)		Lus10000462 [exp]	7.9	0.9138
AT4G14615			unknown protein		Lus10006639 [exp]	7.9	0.9295
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10041209 [exp]	8.1	0.9249
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10021923 [exp]	8.7	0.9258
AT1G34000		OHP2	one-helix protein 2 (.1)		Lus10017779 [exp]	8.8	0.8796
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10019975 [exp]	11.0	0.8786

Compare expression of checked genes

Lus10020982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.