Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33270 499 / 1e-176 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G020800 [exp] 545 / 0 AT1G33270 491 / 4e-174 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2) Potri.001G209500 [exp] 543 / 0 AT1G33270 505 / 9e-180 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF01734 [flax] [poplar] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Lus10020983 pacid=23148967 polypeptide=Lus10020983 locus=Lus10020983.g ID=Lus10020983.BGIv1.0 annot-version=v1.0 ATGGCTCCGAAATTAAAATCTTTGCTTTTACGCTTGTTATTGAAAACCAAACTCAACAACACTAACCCCACCACCGTTCCTCCTCCTCCTCCTCCTCCTC CTCCGCCTCCGCCACCACGTCCATCGTCGCCTCCCATGTCGTCTTCTCCTCTTCCGCCACCGTCGACTTCCTCAATTCTCTCCAATTCTCCGATCTGCCA TCCTTTCCCATCGACCCACTTCCCGCCCCGTCCCCAAGTCCTAACCTTAGCCACTAAAAGCCCCTCTCCCGACAAAAAGGGCGCCTCCGATAACAAATTT ACAAGTCCACCGCCGTCACCTCCACTGTCGCTTTCTCCGACGGAAAAGAAATCATTTGCAGTTGCAACCGGCGAGCTATTCCTCGGAATTGCGTCCAGGA TTTTGAAGCGTAGTAACAAGGGGTCTTCTTCTTCAGGGGCAAACGACTCTTCCATCTTGATGTTCGATAAGCCCAAGCGGAATTTTGATTACGAGGATAG GATTGGGAAGGTTATTGAGGACGAGATTGAGCCGAGCGTGATTTGGGAACAGAGGGTTAAGGATGTCAAGGCGGAGAAAGAGAGGCGGATTGTGACTAGC CCAGGTTTTAGCTTCTCTGCTGCTGGTTTGTTGTTCCCTTATCATTTAGGAGTGGCTCATTGCCTTATTGAGAAGGGTTATATTAAGGAAACTACACCGT TAGCTGGTTCTTCTGCTGGTGCCATAGTCTGTGCAGTTATTGCCTCCGGTGCTACTATGCAGGAGGCTTTACAACTCACCAAAACCCTGGCAGAAGATTG CCGGCTTAAGGGCACGGCATTCCGGCTTGGGGCGGTTCTCAGAGATGTGCTTGAAAAGTTTCTTCCTGATGATGTTCACATTCGATCCAATGGGAGGGTT CGAGTTGCTGTAACACAAATTCTCTGGCGACCTAGGGGTTTGCTAGTGGATCAGTTCAACTCAAAGGAAGACCTCATAAATGCAGTTTTTACATCTTCCT TTATTCCAGGCTATCTTGCTCCAAGGCCTGCCACTATGTTCCGGAACCGACTTTGTGTTGATGGGGGCTTGACATTGTTTATGCCACCAACATCTGCTGA TAAGACGATTCGTGTATGTGCTTTCCCAGCCAGTCGATTAGGACTTGAAGGAATTGGAATTAGTCCGGACTGCAACCCTGAAAACAGGGCTACTGCCAGA CAGCTTTTCAATTGGGCACTAGAACCAGCGGAGGATCACATTCTGGACCAGCTCTTCGAGGTAGGATACATGGATGCGGCAGTCTGGGCTCAGCAGAACC CAGTTGAGCAACTTGTACAGGGTGATAGCTCATTCGAGGAAAGCGTCACTCTATAA
AA sequence Show only first row Show all	>Lus10020983 pacid=23148967 polypeptide=Lus10020983 locus=Lus10020983.g ID=Lus10020983.BGIv1.0 annot-version=v1.0 MAPKLKSLLLRLLLKTKLNNTNPTTVPPPPPPPPPPPPPRPSSPPMSSSPLPPPSTSSILSNSPICHPFPSTHFPPRPQVLTLATKSPSPDKKGASDNKF TSPPPSPPLSLSPTEKKSFAVATGELFLGIASRILKRSNKGSSSSGANDSSILMFDKPKRNFDYEDRIGKVIEDEIEPSVIWEQRVKDVKAEKERRIVTS PGFSFSAAGLLFPYHLGVAHCLIEKGYIKETTPLAGSSAGAIVCAVIASGATMQEALQLTKTLAEDCRLKGTAFRLGAVLRDVLEKFLPDDVHIRSNGRV RVAVTQILWRPRGLLVDQFNSKEDLINAVFTSSFIPGYLAPRPATMFRNRLCVDGGLTLFMPPTSADKTIRVCAFPASRLGLEGIGISPDCNPENRATAR QLFNWALEPAEDHILDQLFEVGYMDAAVWAQQNPVEQLVQGDSSFEESVTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33270			Acyl transferase/acyl hydrolas...		Lus10020983 [exp]	0	1
AT3G03890			FMN binding (.1.2)		Lus10010649 [exp]	1.0	0.8603
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10018735 [exp]	1.7	0.8273
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10025605 [exp]	2.4	0.8374
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10022474 [exp]	5.6	0.7084
					Lus10022348 [exp]	10.2	0.7736
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	12.2	0.7447
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	14.1	0.7856
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002347 [exp]	14.3	0.7027
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10017470 [exp]	14.9	0.7363
AT5G35460			unknown protein		Lus10017161 [exp]	15.5	0.7876

Compare expression of checked genes

Lus10020983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.